View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19368_low_17 (Length: 457)
Name: NF19368_low_17
Description: NF19368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19368_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 10 - 453
Target Start/End: Original strand, 4263567 - 4264011
Alignment:
| Q |
10 |
atgaactggtcagttctcaattcaatcggttgcaccggctgatttagttgggcttttaaaacattgaaatgaataaatgatactctacatatagagctta |
109 |
Q |
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| T |
4263567 |
atgaactggtcagttctcaattcaatcggttgcaccggctgatttagttgggcttttaaaacattgaaatgaataaatgatactctacatatagagctta |
4263666 |
T |
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| Q |
110 |
tcgaatattaaccatctaatctaactacttattagcaactaactattaagcacggatacaaacatggacacgacacggacaatgacaccgaaaatcacat |
209 |
Q |
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| T |
4263667 |
tcgaatattaaccatctaatctaactacttattagcaactaactattaagcacggatacaaacatggacacgacacggacaatgacaccgaaaatcacat |
4263766 |
T |
|
| Q |
210 |
aattcaatggaatcataacgtgcctgacaacaggacacgcctaatatgaggattctaggagtgtctgtgcatcatagtcaactactaactaattcctacc |
309 |
Q |
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| T |
4263767 |
aattcaatggaatcataacgtgcctgacaacaggacacgcctaatctgaggattctaggagtgtccgtgcatcatagtcaactactaactaattcctacc |
4263866 |
T |
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| Q |
310 |
aaaggtagtaacaactaactcaataatcaatcaattgaaaaataacttccgggtaagtggaaattgaacctcaaaatcacattgaaatcatatatatt-n |
408 |
Q |
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| T |
4263867 |
aaaggtagtaacaactaactcaataatcaatcaattgaaaaataacttccgggtaagtggaaattgaacctcaaaatcacattgaaatcatatatattca |
4263966 |
T |
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| Q |
409 |
nnnnnnngcaatattaatatagaagaaacagagaaatgaaatgaa |
453 |
Q |
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| T |
4263967 |
aaaataagcaatattaatatagaagaaacagagaaatgaaatgaa |
4264011 |
T |
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Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 150 - 186
Target Start/End: Complemental strand, 17593824 - 17593788
Alignment:
| Q |
150 |
aactattaagcacggatacaaacatggacacgacacg |
186 |
Q |
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| T |
17593824 |
aactatgaagcacggatacaaacacggacacgacacg |
17593788 |
T |
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