View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19368_low_18 (Length: 446)

Name: NF19368_low_18
Description: NF19368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19368_low_18
NF19368_low_18
[»] chr5 (12 HSPs)
chr5 (145-319)||(27840981-27841156)
chr5 (353-427)||(27841190-27841264)
chr5 (1-71)||(27840907-27840977)
chr5 (366-419)||(34679313-34679366)
chr5 (360-419)||(34429610-34429669)
chr5 (363-416)||(34650400-34650453)
chr5 (366-419)||(34686469-34686522)
chr5 (366-418)||(34421379-34421431)
chr5 (366-413)||(18271635-18271682)
chr5 (145-218)||(43442236-43442310)
chr5 (145-186)||(32670590-32670631)
chr5 (369-419)||(34427563-34427617)
[»] chr7 (6 HSPs)
chr7 (369-419)||(45161200-45161250)
chr7 (145-217)||(41519227-41519299)
chr7 (145-218)||(7309396-7309469)
chr7 (145-217)||(44628146-44628218)
chr7 (145-218)||(24438209-24438283)
chr7 (145-217)||(25132341-25132413)
[»] chr4 (3 HSPs)
chr4 (145-218)||(8030166-8030240)
chr4 (145-217)||(7949416-7949489)
chr4 (145-216)||(31826651-31826723)
[»] chr2 (4 HSPs)
chr2 (145-218)||(21195638-21195712)
chr2 (145-216)||(40791453-40791524)
chr2 (145-217)||(1435105-1435177)
chr2 (151-218)||(38551808-38551876)
[»] chr1 (4 HSPs)
chr1 (369-419)||(2067572-2067622)
chr1 (145-218)||(6122834-6122908)
chr1 (145-218)||(31794226-31794300)
chr1 (145-216)||(44961807-44961879)
[»] chr8 (3 HSPs)
chr8 (145-215)||(33727835-33727906)
chr8 (145-218)||(11819816-11819890)
chr8 (145-218)||(27750770-27750844)
[»] chr6 (1 HSPs)
chr6 (146-217)||(28841455-28841527)


Alignment Details
Target: chr5 (Bit Score: 132; Significance: 2e-68; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 145 - 319
Target Start/End: Original strand, 27840981 - 27841156
Alignment:
Q  145 aagaagctaaattagcccatcaaaattaacac-atagagaatcgaactggagaccttgagaaagagcacactcccggataataaaaagtggcatgaaata 243  Q
    ||||||||||||||||||||| |||||||||| | |||||||||||| ||||| || ||| | ||||||||| || ||||||||||||||||||||||||    
T  27840981 aagaagctaaattagcccatccaaattaacaccagagagaatcgaaccggagatctcgaggaggagcacacttccagataataaaaagtggcatgaaata 27841080  T
Q  244 tttacttccatatcataatataaaaagtggcatgaaatatgcttatttatctttgtattattgaattaggggatgc 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27841081 tttacttccatatcataatataaaaagtggcatgaaatatgcttatttatctttgtattattgaattaggggatgc 27841156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 353 - 427
Target Start/End: Original strand, 27841190 - 27841264
Alignment:
Q  353 atttgacatgttgtcataccacaaaatgaggatcaacaactcccttctgaatgtggatagcacccaaggcagcat 427  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  27841190 atttgacatgttgtcataccacaaaatgaggatcaacaactcccttctgaatgtggatagcacccaacgcagcat 27841264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 27840907 - 27840977
Alignment:
Q  1 aaacaactaaatcacaaaaatccacaactctttttagaattttagtaaatccattgagtttatattattat 71  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  27840907 aaacaactaaatcacaaaaatccacaattctttttagaattttagtaaatccattgagtttatattattat 27840977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 366 - 419
Target Start/End: Complemental strand, 34679366 - 34679313
Alignment:
Q  366 tcataccacaaaatgaggatcaacaactcccttctgaatgtggatagcacccaa 419  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  34679366 tcataccacaaaatgaggatcaacaactccattctgaatgtggatagcacccaa 34679313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 360 - 419
Target Start/End: Original strand, 34429610 - 34429669
Alignment:
Q  360 atgttgtcataccacaaaatgaggatcaacaactcccttctgaatgtggatagcacccaa 419  Q
    ||||| |||||||||||||||||||||||| ||||| ||||| |||||||||||||||||    
T  34429610 atgttatcataccacaaaatgaggatcaaccactcctttctggatgtggatagcacccaa 34429669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 363 - 416
Target Start/End: Complemental strand, 34650453 - 34650400
Alignment:
Q  363 ttgtcataccacaaaatgaggatcaacaactcccttctgaatgtggatagcacc 416  Q
    |||||||||||||||||||||||||||||||||||| |  ||||||||||||||    
T  34650453 ttgtcataccacaaaatgaggatcaacaactcccttttagatgtggatagcacc 34650400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 366 - 419
Target Start/End: Complemental strand, 34686522 - 34686469
Alignment:
Q  366 tcataccacaaaatgaggatcaacaactcccttctgaatgtggatagcacccaa 419  Q
    ||||||||||||||||||||||||||||||||| |||||||| |||| ||||||    
T  34686522 tcataccacaaaatgaggatcaacaactcccttttgaatgtgaatagaacccaa 34686469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 366 - 418
Target Start/End: Original strand, 34421379 - 34421431
Alignment:
Q  366 tcataccacaaaatgaggatcaacaactcccttctgaatgtggatagcaccca 418  Q
    ||||||||||||||||||||||||||||||  | |||||||||||||||||||    
T  34421379 tcataccacaaaatgaggatcaacaactcctctttgaatgtggatagcaccca 34421431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 366 - 413
Target Start/End: Complemental strand, 18271682 - 18271635
Alignment:
Q  366 tcataccacaaaatgaggatcaacaactcccttctgaatgtggatagc 413  Q
    ||||||||||||||||||||||||||||||||| || |||||||||||    
T  18271682 tcataccacaaaatgaggatcaacaactcccttttggatgtggatagc 18271635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 145 - 218
Target Start/End: Complemental strand, 43442310 - 43442236
Alignment:
Q  145 aagaagctaaattagcccatcaaaattaaca-catagagaatcgaactggagaccttgagaaagagcacactccc 218  Q
    ||||| ||||||||||||||| ||||| ||| || ||||||||||||  ||||||||||| | ||||||||||||    
T  43442310 aagaaactaaattagcccatccaaattgacaacagagagaatcgaacctgagaccttgaggaggagcacactccc 43442236  T

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Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 145 - 186
Target Start/End: Original strand, 32670590 - 32670631
Alignment:
Q  145 aagaagctaaattagcccatcaaaattaacacatagagaatc 186  Q
    ||||||||||||||||||||| ||||| |||||| |||||||    
T  32670590 aagaagctaaattagcccatccaaattgacacatggagaatc 32670631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 419
Target Start/End: Original strand, 34427563 - 34427617
Alignment:
Q  369 taccacaaaatgaggatcaaca----actcccttctgaatgtggatagcacccaa 419  Q
    ||||||||||||||||||||||    ||||||||||| ||||| |||||||||||    
T  34427563 taccacaaaatgaggatcaacaaacaactcccttctggatgtgaatagcacccaa 34427617  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 369 - 419
Target Start/End: Original strand, 45161200 - 45161250
Alignment:
Q  369 taccacaaaatgaggatcaacaactcccttctgaatgtggatagcacccaa 419  Q
    |||||||||||| ||||||||||||||||||||||| || |||||||||||    
T  45161200 taccacaaaatgtggatcaacaactcccttctgaatatgaatagcacccaa 45161250  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 145 - 217
Target Start/End: Original strand, 41519227 - 41519299
Alignment:
Q  145 aagaagctaaattagcccatcaaaattaacacatagagaatcgaactggagaccttgagaaagagcacactcc 217  Q
    ||||||||||||||||||| | ||||| ||||| |||||| |||||  ||||||||||| | |||||||||||    
T  41519227 aagaagctaaattagcccacctaaattgacacagagagaagcgaacctgagaccttgaggaggagcacactcc 41519299  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 145 - 218
Target Start/End: Complemental strand, 7309469 - 7309396
Alignment:
Q  145 aagaagctaaattagcccatcaaaattaacacatagagaatcgaactggagaccttgagaaagagcacactccc 218  Q
    |||||||||||||||||||   ||||| ||||  ||||||||||||| ||||||| ||| | ||||||||||||    
T  7309469 aagaagctaaattagcccacttaaattgacacggagagaatcgaacttgagacctcgaggaggagcacactccc 7309396  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 145 - 217
Target Start/End: Original strand, 44628146 - 44628218
Alignment:
Q  145 aagaagctaaattagcccatcaaaattaacacatagagaatcgaactggagaccttgagaaagagcacactcc 217  Q
    ||||||||||||||||||| ||||||| ||||  || ||||| |||| ||||| ||||| | |||||||||||    
T  44628146 aagaagctaaattagcccaccaaaattgacaccgagggaatcaaacttgagactttgaggaggagcacactcc 44628218  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 145 - 218
Target Start/End: Original strand, 24438209 - 24438283
Alignment:
Q  145 aagaagctaaattagcccatcaaaattaaca-catagagaatcgaactggagaccttgagaaagagcacactccc 218  Q
    ||||||||||||||||||||  ||||| ||| || |||||||||||   || ||||| |||||||||||||||||    
T  24438209 aagaagctaaattagcccattcaaattgacaccagagagaatcgaatctgaaaccttaagaaagagcacactccc 24438283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 145 - 217
Target Start/End: Original strand, 25132341 - 25132413
Alignment:
Q  145 aagaagctaaattagcccatcaaaattaacacatagagaatcgaactggagaccttgagaaagagcacactcc 217  Q
    ||||||||||||||||||| | |||||| ||    |||||||||||  |||||||| |||| |||||||||||    
T  25132341 aagaagctaaattagcccacccaaattagcattgggagaatcgaacctgagaccttaagaaggagcacactcc 25132413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 145 - 218
Target Start/End: Original strand, 8030166 - 8030240
Alignment:
Q  145 aagaagctaaattagcccatcaaaattaacac-atagagaatcgaactggagaccttgagaaagagcacactccc 218  Q
    ||||||||||||||||||| | ||||| |||| | || |||||||||| ||||||||||| | ||||||||||||    
T  8030166 aagaagctaaattagcccacccaaattgacactagagggaatcgaacttgagaccttgaggaggagcacactccc 8030240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 145 - 217
Target Start/End: Original strand, 7949416 - 7949489
Alignment:
Q  145 aagaagctaaattagcccatcaaaattaacac-atagagaatcgaactggagaccttgagaaagagcacactcc 217  Q
    ||||||||||||||||||| | ||||| |||| | ||||||||||||  ||||||||||| | |||||||||||    
T  7949416 aagaagctaaattagcccacctaaattgacaccagagagaatcgaacctgagaccttgaggaggagcacactcc 7949489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 145 - 216
Target Start/End: Complemental strand, 31826723 - 31826651
Alignment:
Q  145 aagaagctaaattagcccatcaaaattaacac-atagagaatcgaactggagaccttgagaaagagcacactc 216  Q
    |||||| |||||||||||| | ||||| |||| | || |||||||||| ||||||||||| | ||||||||||    
T  31826723 aagaaggtaaattagcccacccaaattgacactaaagggaatcgaacttgagaccttgaggaggagcacactc 31826651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 145 - 218
Target Start/End: Original strand, 21195638 - 21195712
Alignment:
Q  145 aagaagctaaattagcccatcaaaattaacac-atagagaatcgaactggagaccttgagaaagagcacactccc 218  Q
    ||||||||||||||||||||| ||||| |||| | || |||||||||  ||||||||||| | ||||||||||||    
T  21195638 aagaagctaaattagcccatccaaattgacactagagggaatcgaacctgagaccttgaggaggagcacactccc 21195712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 145 - 216
Target Start/End: Original strand, 40791453 - 40791524
Alignment:
Q  145 aagaagctaaattagcccatcaaaattaacacatagagaatcgaactggagaccttgagaaagagcacactc 216  Q
    ||||||||||||||| ||||| ||||| |  |   |||||||||||| ||||||||||||| ||||||||||    
T  40791453 aagaagctaaattagtccatccaaattcaatcggggagaatcgaacttgagaccttgagaaggagcacactc 40791524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 145 - 217
Target Start/End: Complemental strand, 1435177 - 1435105
Alignment:
Q  145 aagaagctaaattagcccatcaaaattaaca-catagagaatcgaactggagaccttgagaaagagcacactcc 217  Q
    ||||||||||||||||||| | ||||| ||| || ||||||||||||| ||||||||||| |  ||||||||||    
T  1435177 aagaagctaaattagcccacccaaattgacaccagagagaatcgaact-gagaccttgaggagaagcacactcc 1435105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 218
Target Start/End: Complemental strand, 38551876 - 38551808
Alignment:
Q  151 ctaaattagcccatcaaaattaaca-catagagaatcgaactggagaccttgagaaagagcacactccc 218  Q
    ||||||||||| ||| ||||||||| |  ||||||||||||   ||||||| |||||||||||||||||    
T  38551876 ctaaattagccaatctaaattaacatcggagagaatcgaacacaagaccttaagaaagagcacactccc 38551808  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 369 - 419
Target Start/End: Original strand, 2067572 - 2067622
Alignment:
Q  369 taccacaaaatgaggatcaacaactcccttctgaatgtggatagcacccaa 419  Q
    |||||||||||| |||||||| ||||| |||||||||||||| ||||||||    
T  2067572 taccacaaaatgtggatcaaccactcctttctgaatgtggattgcacccaa 2067622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 145 - 218
Target Start/End: Complemental strand, 6122908 - 6122834
Alignment:
Q  145 aagaagctaaattagcccatcaaaattaacac-atagagaatcgaactggagaccttgagaaagagcacactccc 218  Q
    ||||||||||||||||||| | ||||| |||| | || |||||||||  ||||||||||| | ||||||||||||    
T  6122908 aagaagctaaattagcccacccaaattgacactagagggaatcgaacctgagaccttgaggaggagcacactccc 6122834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 145 - 218
Target Start/End: Original strand, 31794226 - 31794300
Alignment:
Q  145 aagaagctaaattagcccatcaaaattaacac-atagagaatcgaactggagaccttgagaaagagcacactccc 218  Q
    ||||||||||||||||||| | ||||| |||| | || ||||||||||  |||||||||| | ||||||||||||    
T  31794226 aagaagctaaattagcccacccaaattgacaccagagggaatcgaactctagaccttgaggaggagcacactccc 31794300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 145 - 216
Target Start/End: Complemental strand, 44961879 - 44961807
Alignment:
Q  145 aagaagctaaattagcccatcaaaattaacac-atagagaatcgaactggagaccttgagaaagagcacactc 216  Q
    ||||||||||||||||||| | ||||| |||| | ||||||||||||  |||||| |||| | ||||||||||    
T  44961879 aagaagctaaattagcccacccaaattgacactagagagaatcgaacctgagaccctgaggaggagcacactc 44961807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 145 - 215
Target Start/End: Original strand, 33727835 - 33727906
Alignment:
Q  145 aagaagctaaattagcccatcaaaattaacac-atagagaatcgaactggagaccttgagaaagagcacact 215  Q
    ||||||||||||||||||||| ||||| |||| | || |||||||||  ||||||||||| | |||||||||    
T  33727835 aagaagctaaattagcccatccaaattgacactagagggaatcgaacctgagaccttgaggaggagcacact 33727906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 145 - 218
Target Start/End: Complemental strand, 11819890 - 11819816
Alignment:
Q  145 aagaagctaaattagcccatcaaaattaacac-atagagaatcgaactggagaccttgagaaagagcacactccc 218  Q
    ||||||||||||||||||| | ||||| |||| | || |||||||||  ||||||||||| | ||||||||||||    
T  11819890 aagaagctaaattagcccacccaaattgacactagagtgaatcgaacctgagaccttgaggaggagcacactccc 11819816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 145 - 218
Target Start/End: Complemental strand, 27750844 - 27750770
Alignment:
Q  145 aagaagctaaattagcccatcaaaattaacac-atagagaatcgaactggagaccttgagaaagagcacactccc 218  Q
    ||||||||||||||| ||||| ||||| |||| | || |||||||||  ||||||||||| | ||||||||||||    
T  27750844 aagaagctaaattagtccatccaaattgacactagagggaatcgaacctgagaccttgaggaggagcacactccc 27750770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 146 - 217
Target Start/End: Complemental strand, 28841527 - 28841455
Alignment:
Q  146 agaagctaaattagcccatcaaaattaacacat-agagaatcgaactggagaccttgagaaagagcacactcc 217  Q
    |||| ||||||||||| ||| ||||| ||||   ||||||||||||| ||||||||||| | |||||||||||    
T  28841527 agaaactaaattagccaatctaaattgacaccggagagaatcgaacttgagaccttgaggaggagcacactcc 28841455  T

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