View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19368_low_21 (Length: 434)

Name: NF19368_low_21
Description: NF19368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19368_low_21
NF19368_low_21
[»] chr5 (5 HSPs)
chr5 (9-419)||(5775402-5775796)
chr5 (187-419)||(5768747-5768981)
chr5 (144-180)||(40197703-40197739)
chr5 (150-183)||(39074999-39075032)
chr5 (145-179)||(3247769-3247803)
[»] chr1 (5 HSPs)
chr1 (142-183)||(15646121-15646162)
chr1 (147-183)||(14321104-14321140)
chr1 (142-183)||(27858777-27858818)
chr1 (142-183)||(34767266-34767307)
chr1 (144-172)||(33776679-33776707)
[»] chr7 (1 HSPs)
chr7 (142-180)||(28749909-28749947)
[»] chr4 (7 HSPs)
chr4 (142-180)||(27924067-27924105)
chr4 (145-179)||(32004408-32004442)
chr4 (145-183)||(35803586-35803624)
chr4 (147-180)||(16467932-16467965)
chr4 (144-175)||(55292373-55292404)
chr4 (147-175)||(38179832-38179860)
chr4 (143-183)||(47769648-47769688)
[»] chr2 (3 HSPs)
chr2 (144-179)||(37807232-37807267)
chr2 (142-183)||(37985140-37985181)
chr2 (147-183)||(5963946-5963982)
[»] scaffold0024 (1 HSPs)
scaffold0024 (115-180)||(36209-36272)
[»] chr6 (3 HSPs)
chr6 (138-183)||(27133906-27133951)
chr6 (143-172)||(3807889-3807918)
chr6 (143-180)||(23898842-23898879)
[»] chr3 (3 HSPs)
chr3 (147-179)||(24924627-24924659)
chr3 (147-179)||(51672506-51672538)
chr3 (138-172)||(52201288-52201322)


Alignment Details
Target: chr5 (Bit Score: 326; Significance: 0; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 9 - 419
Target Start/End: Complemental strand, 5775796 - 5775402
Alignment:
Q  9 ataatactccatgtgaaatccaatgcctttataaataaactgaaatccaacgccagtataaataaaatgatggttaaaaagttgatgtatatggttaaaa 108  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5775796 ataatactccatgtgaaatccaatgcctttataaataaagtgaaatccaacgccagtataaataaaatgatggttaaaaagttgatgtatatggttaaaa 5775697  T
Q  109 attaagggaaaatgttaactagtgtctttttaaggcactagttaagaagattaatatagaaattatgcattgaaataaacactgaaaaaatcaaatacta 208  Q
    ||||| |||||||||||                |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  5775696 attaatggaaaatgtta----------------ggcactagttaagaagattaatatagaaattatgcattgaaataaacactgaaaaaatcaaacacta 5775613  T
Q  209 gattagggtttctataattgttgtaagagattatgattataatgtgatttgatttgattcaatagttgtctaaacaaaatttacactgttattatttgca 308  Q
    |||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  5775612 gattagggtttctatacttattgtaagagattatgattataatgtgatttgatttgattcaataattgtctaaacaaaatttacactgttattatttgca 5775513  T
Q  309 taacagttatgattaatttgtttgttttgcctctatttatacttgggtactgttttttattagagggacttggaagagcgactccacgatggtgttttcg 408  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||    
T  5775512 taacagttatgattaatttgtttgttttgcctctatttatacttgggtactgttttctattagagggacttggaagagcgactccacaatggtgttttcg 5775413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 187 - 419
Target Start/End: Complemental strand, 5768981 - 5768747
Alignment:
Q  187 acactgaaaaaatcaaatactagattagggtttctataattgttgtaagagattatgattataatgtgatttgatttgattcaatagttgtctaaacaaa 286  Q
    ||||||||||||||||| |||||||||||||||||||| |||| |||||||| |||||||||||| ||||||||||| ||||  ||||||||||||||||    
T  5768981 acactgaaaaaatcaaacactagattagggtttctatacttgtcgtaagagactatgattataatatgatttgatttaattctgtagttgtctaaacaaa 5768882  T
Q  287 atttacactgttattatttgcataacagttatgattaatttgtttgttttgcctctatttatacttgggtactgttttt--tattagagggacttggaag 384  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| || ||||||||  |||||||||||||| ||||    
T  5768881 atttacactgttattatttgcataacagttatgattaatttgtttattttgcctctgtttatacttgagttctgtttttcctattagagggacttagaag 5768782  T
Q  385 agcgactccacgatggtgttttcggaggatgaaat 419  Q
    ||||||||||| |||||||||||||||||||||||    
T  5768781 agcgactccacaatggtgttttcggaggatgaaat 5768747  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 144 - 180
Target Start/End: Complemental strand, 40197739 - 40197703
Alignment:
Q  144 cactagttaagaagattaatatagaaattatgcattg 180  Q
    |||||||||||||||||||||||||||||||||||||    
T  40197739 cactagttaagaagattaatatagaaattatgcattg 40197703  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 150 - 183
Target Start/End: Original strand, 39074999 - 39075032
Alignment:
Q  150 ttaagaagattaatatagaaattatgcattgaaa 183  Q
    ||||||||||||||||||||||||||||||||||    
T  39074999 ttaagaagattaatatagaaattatgcattgaaa 39075032  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 145 - 179
Target Start/End: Complemental strand, 3247803 - 3247769
Alignment:
Q  145 actagttaagaagattaatatagaaattatgcatt 179  Q
    ||||||||||||||||||||||||| |||||||||    
T  3247803 actagttaagaagattaatatagaagttatgcatt 3247769  T

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Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 142 - 183
Target Start/End: Original strand, 15646121 - 15646162
Alignment:
Q  142 ggcactagttaagaagattaatatagaaattatgcattgaaa 183  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  15646121 ggcactagttaagaagattaatatagaaattatgcattgaaa 15646162  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 147 - 183
Target Start/End: Complemental strand, 14321140 - 14321104
Alignment:
Q  147 tagttaagaagattaatatagaaattatgcattgaaa 183  Q
    |||||||||||||||||||||||||||||||||||||    
T  14321140 tagttaagaagattaatatagaaattatgcattgaaa 14321104  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 183
Target Start/End: Complemental strand, 27858818 - 27858777
Alignment:
Q  142 ggcactagttaagaagattaatatagaaattatgcattgaaa 183  Q
    ||||||| ||||||||||||||||| ||||||||| ||||||    
T  27858818 ggcactaattaagaagattaatataaaaattatgcgttgaaa 27858777  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 183
Target Start/End: Original strand, 34767266 - 34767307
Alignment:
Q  142 ggcactagttaagaagattaatatagaaattatgcattgaaa 183  Q
    |||| |||||||||||||||||||| ||||||||| ||||||    
T  34767266 ggcattagttaagaagattaatataaaaattatgccttgaaa 34767307  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 144 - 172
Target Start/End: Original strand, 33776679 - 33776707
Alignment:
Q  144 cactagttaagaagattaatatagaaatt 172  Q
    |||||||||||||||||||||||||||||    
T  33776679 cactagttaagaagattaatatagaaatt 33776707  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 142 - 180
Target Start/End: Original strand, 28749909 - 28749947
Alignment:
Q  142 ggcactagttaagaagattaatatagaaattatgcattg 180  Q
    |||||||||||||||||||||||||||||||||||||||    
T  28749909 ggcactagttaagaagattaatatagaaattatgcattg 28749947  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 142 - 180
Target Start/End: Complemental strand, 27924105 - 27924067
Alignment:
Q  142 ggcactagttaagaagattaatatagaaattatgcattg 180  Q
    |||||||||||||||||||||||||||||||||||||||    
T  27924105 ggcactagttaagaagattaatatagaaattatgcattg 27924067  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 145 - 179
Target Start/End: Original strand, 32004408 - 32004442
Alignment:
Q  145 actagttaagaagattaatatagaaattatgcatt 179  Q
    |||||||||||||||||||||||||||||||||||    
T  32004408 actagttaagaagattaatatagaaattatgcatt 32004442  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 145 - 183
Target Start/End: Complemental strand, 35803624 - 35803586
Alignment:
Q  145 actagttaagaagattaatatagaaattatgcattgaaa 183  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  35803624 actagttaagaagtttaatatagaaattatgcattgaaa 35803586  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 147 - 180
Target Start/End: Complemental strand, 16467965 - 16467932
Alignment:
Q  147 tagttaagaagattaatatagaaattatgcattg 180  Q
    ||||||||||||||||||||||||||||||||||    
T  16467965 tagttaagaagattaatatagaaattatgcattg 16467932  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 144 - 175
Target Start/End: Complemental strand, 55292404 - 55292373
Alignment:
Q  144 cactagttaagaagattaatatagaaattatg 175  Q
    ||||||||||||||||||||||||||||||||    
T  55292404 cactagttaagaagattaatatagaaattatg 55292373  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 147 - 175
Target Start/End: Original strand, 38179832 - 38179860
Alignment:
Q  147 tagttaagaagattaatatagaaattatg 175  Q
    |||||||||||||||||||||||||||||    
T  38179832 tagttaagaagattaatatagaaattatg 38179860  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 143 - 183
Target Start/End: Original strand, 47769648 - 47769688
Alignment:
Q  143 gcactagttaagaagattaatatagaaattatgcattgaaa 183  Q
    ||||||||||| |||||||||||| |||||||| |||||||    
T  47769648 gcactagttaaaaagattaatataaaaattatgtattgaaa 47769688  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 144 - 179
Target Start/End: Original strand, 37807232 - 37807267
Alignment:
Q  144 cactagttaagaagattaatatagaaattatgcatt 179  Q
    ||||||||||||||||||||||||||||||||||||    
T  37807232 cactagttaagaagattaatatagaaattatgcatt 37807267  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 142 - 183
Target Start/End: Original strand, 37985140 - 37985181
Alignment:
Q  142 ggcactagttaagaagattaatatagaaattatgcattgaaa 183  Q
    |||||||||||| |||||||||||||||||||| ||||||||    
T  37985140 ggcactagttaataagattaatatagaaattatacattgaaa 37985181  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 147 - 183
Target Start/End: Original strand, 5963946 - 5963982
Alignment:
Q  147 tagttaagaagattaatatagaaattatgcattgaaa 183  Q
    ||||||| |||||||||||| ||||||||||||||||    
T  5963946 tagttaaaaagattaatataaaaattatgcattgaaa 5963982  T

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Target: scaffold0024 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 115 - 180
Target Start/End: Original strand, 36209 - 36272
Alignment:
Q  115 ggaaaatgttaactagtgtctttttaaggcactagttaagaagattaatatagaaattatgcattg 180  Q
    |||||||| ||||||||||| ||  | ||||||||||||||||| || ||||||||||||||||||    
T  36209 ggaaaatgctaactagtgtcctt--agggcactagttaagaagactattatagaaattatgcattg 36272  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 138 - 183
Target Start/End: Original strand, 27133906 - 27133951
Alignment:
Q  138 ttaaggcactagttaagaagattaatatagaaattatgcattgaaa 183  Q
    |||||||| ||||||||||||||||||||| |||| ||||||||||    
T  27133906 ttaaggcattagttaagaagattaatatagtaattttgcattgaaa 27133951  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 143 - 172
Target Start/End: Original strand, 3807889 - 3807918
Alignment:
Q  143 gcactagttaagaagattaatatagaaatt 172  Q
    ||||||||||||||||||||||||||||||    
T  3807889 gcactagttaagaagattaatatagaaatt 3807918  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 143 - 180
Target Start/End: Complemental strand, 23898879 - 23898842
Alignment:
Q  143 gcactagttaagaagattaatatagaaattatgcattg 180  Q
    |||||||||||||||||||| |||||||||||| ||||    
T  23898879 gcactagttaagaagattaacatagaaattatgtattg 23898842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 147 - 179
Target Start/End: Complemental strand, 24924659 - 24924627
Alignment:
Q  147 tagttaagaagattaatatagaaattatgcatt 179  Q
    |||||||||||||||||||||||||||||||||    
T  24924659 tagttaagaagattaatatagaaattatgcatt 24924627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 147 - 179
Target Start/End: Original strand, 51672506 - 51672538
Alignment:
Q  147 tagttaagaagattaatatagaaattatgcatt 179  Q
    |||||||||||||||||||||||||||||||||    
T  51672506 tagttaagaagattaatatagaaattatgcatt 51672538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 138 - 172
Target Start/End: Original strand, 52201288 - 52201322
Alignment:
Q  138 ttaaggcactagttaagaagattaatatagaaatt 172  Q
    ||||||||||||||||||||||||||||| |||||    
T  52201288 ttaaggcactagttaagaagattaatatataaatt 52201322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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