View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19368_low_23 (Length: 427)
Name: NF19368_low_23
Description: NF19368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19368_low_23 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 408; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 1 - 408
Target Start/End: Original strand, 36563682 - 36564089
Alignment:
| Q |
1 |
cataccttaaaaaatggtgaagggcgatgagacattgacaagaaattaaatgtttatagtcatacctagaagaaacaataaaaaccacatacaaactggt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36563682 |
cataccttaaaaaatggtgaagggcgatgagacattgacaagaaattaaatgtttatagtcatacctagaagaaacaataaaaaccacatacaaactggt |
36563781 |
T |
|
| Q |
101 |
cattaaaaactccaaccaaactttccttgcgcattaatcacatttaactaaccttgaacaactactatatatacatatattaaaccttctgtgtaagcca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36563782 |
cattaaaaactccaaccaaactttccttgcgcattaatcacatttaactaaccttgaacaactactatatatacatatattaaaccttctgtgtaagcca |
36563881 |
T |
|
| Q |
201 |
gaatagcttctccaaaagagttaaaataaaaatagtacataatattattacttcattattatcatgaggcttatatgcatatgcatagcatggttaatat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36563882 |
gaatagcttctccaaaagagttaaaataaaaatagtacataatattattacttcattattatcatgaggcttatatgcatatgcatagcatggttaatat |
36563981 |
T |
|
| Q |
301 |
tgataacccaaattatcatggtgacttgcaagactaaaaatcatgtaccagcagtaattgtctttggtgattcttctgtggattctggaaacaataatag |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36563982 |
tgataacccaaattatcatggtgacttgcaagactaaaaatcatgtaccagcagtaattgtctttggtgattcttctgtggattctggaaacaataatag |
36564081 |
T |
|
| Q |
401 |
gatagcta |
408 |
Q |
| |
|
|||||||| |
|
|
| T |
36564082 |
gatagcta |
36564089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 278 - 404
Target Start/End: Original strand, 36576588 - 36576714
Alignment:
| Q |
278 |
catatgcatagcatggttaatattgataacccaaattatcatggtgacttgcaagactaaaaatcatgtaccagcagtaattgtctttggtgattcttct |
377 |
Q |
| |
|
||||||||| | |||| ||||||||||||| ||||| ||||||||||||||||| | | ||||| ||||||||||||||||||| |||||||| || ||| |
|
|
| T |
36576588 |
catatgcatcgtatggctaatattgataactcaaatgatcatggtgacttgcaataatgaaaattatgtaccagcagtaattgtgtttggtgactcctct |
36576687 |
T |
|
| Q |
378 |
gtggattctggaaacaataataggata |
404 |
Q |
| |
|
|| |||||||||||||| |||| |||| |
|
|
| T |
36576688 |
gttgattctggaaacaacaatatgata |
36576714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University