View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19368_low_24 (Length: 401)
Name: NF19368_low_24
Description: NF19368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19368_low_24 |
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Alignment Details
Target: chr5 (Bit Score: 350; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 17 - 390
Target Start/End: Complemental strand, 39227794 - 39227421
Alignment:
| Q |
17 |
agtttgatggtgaaattccacctcattttggtaaccttgttaatttagttcatcttgatcttgcaaactgtggtttgaaaggttcaattccacatgagct |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39227794 |
agtttgatggtgaaattccacctcattttggtaaccttgttaatttagttcatcttgatcttgcaaactgtggtttgaaaggttcaattccacatgagct |
39227695 |
T |
|
| Q |
117 |
aggaaaactttacaaactagacacacttttcttgcaaaccaatcaacttaatggttcaattccacctcaattagggaatcttagtagtttgaaatctctt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39227694 |
aggaaaactttacaaactagacacacttttcttgcaaaccaatcaacttaatggttcaattccacctcaattagggaatcttagtagtttgaaatctctt |
39227595 |
T |
|
| Q |
217 |
gatatgtcaaacaatgagttaaatggaaacatacctaatgagttttcaaatcttcgcgaactcacactcttgaacttgttcatcaacaaactctatggtg |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39227594 |
gatatgtcaaacaatgagttaaatggaaacatacctaatgagttttcaaatcttcgcgaactcacactcttgaacttgttcatcaacaaactctatggtg |
39227495 |
T |
|
| Q |
317 |
aaattccatcnnnnnnnnctgagttaccaaatttggaagtgttaaagctttggcaaaacaacttcacaggttct |
390 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39227494 |
aaattccatcttttttttctgagttaccaaatttggaagtgttaaagctttggcaaaacaacttcacaggttct |
39227421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 17 - 390
Target Start/End: Complemental strand, 25546993 - 25546622
Alignment:
| Q |
17 |
agtttgatggtgaaattccacctcattttggtaaccttgttaatttagttcatcttgatcttgcaaactgtggtttgaaaggttcaattccacatgagct |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25546993 |
agtttgatggtgaaattccacctcattttggtaaccttgttaatttacttcatcttgatcttgcaaactgtggtttgaaaggttcaattccacatgagct |
25546894 |
T |
|
| Q |
117 |
aggaaaactttacaaactagacacacttttcttgcaaaccaatcaacttaatggttcaattccacctcaattagggaatcttagtagtttgaaatctctt |
216 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25546893 |
acgaaaactttacaaactagacacacttttcttgcaaaccaatcaacttaatggttcaattccacctcaattagggaatcttagtagtttgaaatctctt |
25546794 |
T |
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| Q |
217 |
gatatgtcaaacaatgagttaaatggaaacatacctaatgagttttcaaatcttcgcgaactcacactcttgaacttgttcatcaacaaactctatggtg |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
25546793 |
gatatgtcaaacaatgagttaaatggaaacatacctaatgagttttcaaatcttcgcgaactcacactcttgaacttgttcatcaacaaactc--tggtg |
25546696 |
T |
|
| Q |
317 |
aaattccatcnnnnnnnnctgagttaccaaatttggaagtgttaaagctttggcaaaacaacttcacaggttct |
390 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
25546695 |
aaattccatcttttttttctgagttaccaaatttggaagtgttaaagctttggcataacaacttcacaggttct |
25546622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 91 - 219
Target Start/End: Original strand, 16733490 - 16733618
Alignment:
| Q |
91 |
ttgaaaggttcaattccacatgagctaggaaaactttacaaactagacacacttttcttgcaaaccaatcaacttaatggttcaattccacctcaattag |
190 |
Q |
| |
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||||||||||||||||||| |||| |||| ||||| |||| ||||| |||||||||||||||| |||||||| | ||||| ||||||||| |||||| |
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| T |
16733490 |
ttgaaaggttcaattccacttgagttaggtcaacttaacaagctagatacacttttcttgcaaaaaaatcaactcactggttttattccacctgaattag |
16733589 |
T |
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| Q |
191 |
ggaatcttagtagtttgaaatctcttgat |
219 |
Q |
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| ||| | ||||| ||||| |||||||| |
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| T |
16733590 |
gtaatttgagtagattgaatgctcttgat |
16733618 |
T |
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