View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19368_low_25 (Length: 394)
Name: NF19368_low_25
Description: NF19368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19368_low_25 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 358; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 1 - 394
Target Start/End: Complemental strand, 6554595 - 6554203
Alignment:
| Q |
1 |
aagcacttactctgaaatcaattggtagatacacaaaatcataagctcctttatggtgttcatcgattgcagccaacagcatcttggaagtatacctgta |
100 |
Q |
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| T |
6554595 |
aagcacttactctgaaatcaattggtagatacacaaaatcataagctcctttatggtgttcatcgattgcagccaacagcatcttggaagtatacctgta |
6554496 |
T |
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| Q |
101 |
aatgatcaaagtcttagtcaagagaaattgagatgttaagaaaatgatttaaatcataatctaaaacataccaaatgaatatacaaacttttcgcattag |
200 |
Q |
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| T |
6554495 |
aatgatcaaaatcttagtcaagagaaat-gagatgttaagaaaatgatttaaatcataatctaaaacataccaaatgaatatacaaactttttgcattag |
6554397 |
T |
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| Q |
201 |
agaatatgaaaagcattgatactacttacttgttaggaatgttcttaatcataagtgttgttcggttatcttcgcctcttttgatgcagtcaatatcaag |
300 |
Q |
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| T |
6554396 |
agaatatgaaaaacatcgatgctacttacttgttaggaatgttcttaatcataagtgttgttcggttatcttcgccccttttaatgcagtcaatatcaag |
6554297 |
T |
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| Q |
301 |
ttcatatcgtttcatgtcagccaagtttgatgcgccaacatttctacggcttcgaacgcgtttgtatgtatcaaatgaattaatcatatggttt |
394 |
Q |
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| T |
6554296 |
ttcatatcgtttcatgtcagccaagtttgatgcgccaacatttctacggcttcgaacgcgtttgtatgtatcaaatgaattaatcatatggttt |
6554203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 8 - 393
Target Start/End: Original strand, 49057977 - 49058366
Alignment:
| Q |
8 |
tactctgaaatcaattggtagatacacaaaatcataagctcctttatggtgttcatcgattgcagccaacagcatcttggaagtatacctgtaaatgatc |
107 |
Q |
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| T |
49057977 |
tactctgaaatcaattggtagatacacaaagtcataagttctttaatggcgttcatcaattgcagccaacaacatctcagaagtatacctgcaac----- |
49058071 |
T |
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| Q |
108 |
aaagtcttagtcaagagaaattgagatgtt--aagaaaatgatttaaatcataatctaaaacataccaaatgaatatacaaacttttcgcattagagaat |
205 |
Q |
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||||| |||||||||||||| ||||| | || ||||| ||||||||||||||| |||||||||||||||||||||||| |||| |||||||||||| |
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| T |
49058072 |
-aagtcatagtcaagagaaat-gagatttacaaaaaaaattatttaaatcataatccaaaacataccaaatgaatatacaatttttttgcattagagaat |
49058169 |
T |
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| Q |
206 |
atg---aaaagcat------tgatactacttacttgttaggaatgttcttaatcataagtgttgttcggttatcttcgcctcttttgatgcagtcaatat |
296 |
Q |
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| T |
49058170 |
atataaaaaaaaataaaaaataatacagcttacttgttaggaatgttcttaatcataagtgttgttcggttatcttcaccccttattatgcaatcaatat |
49058269 |
T |
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| Q |
297 |
caagttcatatcgtttcatgtcagccaagtttgatgcgccaacatttctacggcttcgaacgcgtttgtatgtatcaaatgaattaatcatatggtt |
393 |
Q |
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|||| ||||| ||||||||||||||||| || | ||||| |||||||||||||||| || | || | | ||||||||||| |||| ||||||||| |
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| T |
49058270 |
caagctcataccgtttcatgtcagccaaattcgtcgcgcctacatttctacggcttctaatgtgtctattagtatcaaatgagttaaccatatggtt |
49058366 |
T |
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