View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19368_low_26 (Length: 392)
Name: NF19368_low_26
Description: NF19368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19368_low_26 |
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Alignment Details
Target: chr7 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 19 - 380
Target Start/End: Original strand, 7548463 - 7548824
Alignment:
| Q |
19 |
gaccttattgtgggaaagtagaaggctcagttacgctctttgtgtttcacctgtgaacgaggcattcatcaagaactcattggatgagttcagcgatctt |
118 |
Q |
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| T |
7548463 |
gaccttattgtgggaaagtagaaggctcagttacgctctttgtgtttcacctgtgaacgaggcattcatcaagaactcattggatgagttcagcgatctt |
7548562 |
T |
|
| Q |
119 |
tcagatattaatttctggatgcataatcttaaaggaaaccaatcctcatttatagggtttcaacaaaatttctcatttttgtttgcaagctctcataaga |
218 |
Q |
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||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7548563 |
tcaaatattaatttctggatgcataatcttaaaggaaacgaatcctcatttatagggtttcaacaaaatttctcatttttgtttgcaagctctcataaga |
7548662 |
T |
|
| Q |
219 |
gttcttgcgatcatgggagcacttttcaagtagaaatcacagttgaagaagttcaaaaagctgtcctcaaactaatttcaaatgtatgtccttcttagac |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7548663 |
attcttgcgatcatgggagcacttttcaagtagaaatcacagttgaagaagttcaaaaagctgtcctcaaactaatttcaaatgtatgtccttcttagat |
7548762 |
T |
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| Q |
319 |
ataatttatcattccttattttattttaactcatcactctattctttgttaatcttctccta |
380 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7548763 |
ataatttatcattccttattttattttaactcatcactctattctttgttaatcttctccta |
7548824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 19 - 380
Target Start/End: Original strand, 1129778 - 1130140
Alignment:
| Q |
19 |
gaccttattgtgggaaagtagaaggctcagttacgctctttgtgtttcacctgtgaacgaggcattcatcaagaactcattggatgagttcagcgatctt |
118 |
Q |
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||||||||||||||||||||||||||| ||| ||||||| |||||||| ||||| || |||||||||||| ||| ||||||||||| || ||||| ||| |
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| T |
1129778 |
gaccttattgtgggaaagtagaaggcttagtcacgctctctgtgtttcgcctgttaatgaggcattcatcctgaattcattggatgattttagcgacctt |
1129877 |
T |
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| Q |
119 |
tcagatattaatttctggatgcataatcttaaaggaaaccaatcctcatttatagggtttcaacaaaatttctcatttttgtttgcaagctctcataaga |
218 |
Q |
| |
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||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| || |||||||| |||||||||||||||||||||| || |
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| T |
1129878 |
tcaaatattaatttctggatacataatcttaaaggaaaccaatcctcattaatagggtttcagcagaatttctcttttttgtttgcaagctctcatagga |
1129977 |
T |
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| Q |
219 |
gttcttgcgatcatgggagcacttttcaagtagaaatcacagttgaagaagttcaaaaagctgtcctcaaactaatttcaaatgta-tgtccttcttaga |
317 |
Q |
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|||||||||||||||| ||| | ||||||||||||||| ||||||| |||||||||||||||| |||||||| |||||||||||| |||||||||||| |
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| T |
1129978 |
gttcttgcgatcatggtagctcgtttcaagtagaaatctcagttgacgaagttcaaaaagctgcactcaaactgatttcaaatgtacagtccttcttaga |
1130077 |
T |
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| Q |
318 |
cataatttatcattccttattttattttaactcatcactctattctttgttaatcttctccta |
380 |
Q |
| |
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||| |||||| | | | ||||||||| |||||||||||||||| | |||||||||||||||| |
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| T |
1130078 |
catgatttatggtacttcattttatttgaactcatcactctattttctgttaatcttctccta |
1130140 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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