View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19368_low_27 (Length: 385)
Name: NF19368_low_27
Description: NF19368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19368_low_27 |
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Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-109; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 57 - 309
Target Start/End: Complemental strand, 8311280 - 8311028
Alignment:
| Q |
57 |
ggataagcattgtaagaacttatataacaaaatactagtagtattgatgtgggagacataaaattccaataactttgttagatccacatgggattgtgtt |
156 |
Q |
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| T |
8311280 |
ggataagcattgtaagaacttatataacaaaatactagtagtattgatgtgggagacataaaattccaataactttgttagatccacattggattgtgtt |
8311181 |
T |
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| Q |
157 |
tcaactttaaattgtacctactccataggggaccnnnnnnnnnnnnnnnncatatttatagatattatgttcttttcactatgaatgaacacaatttctt |
256 |
Q |
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| T |
8311180 |
tcaactttaaattgtacctactccataggggaccaaaacaaaaacaaaaacatatttatagatattatgttcttttcactatgaatgaacacaatttctt |
8311081 |
T |
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| Q |
257 |
tagtacactaactcacttagttgaaaaggtggtgttgaacagaactgtggttc |
309 |
Q |
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| T |
8311080 |
tagtacactaactcacttagttgaaaaggtggtgttgaacagaactgtggttc |
8311028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 34
Target Start/End: Complemental strand, 8311331 - 8311301
Alignment:
| Q |
4 |
aataaataatttatgtatattgttatgagag |
34 |
Q |
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| T |
8311331 |
aataaataatttatgtatattgttatgagag |
8311301 |
T |
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