View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19368_low_30 (Length: 381)

Name: NF19368_low_30
Description: NF19368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19368_low_30
NF19368_low_30
[»] chr2 (2 HSPs)
chr2 (16-258)||(24163929-24164170)
chr2 (313-371)||(24164225-24164283)
[»] chr5 (7 HSPs)
chr5 (43-129)||(1482063-1482149)
chr5 (16-124)||(1486545-1486653)
chr5 (45-120)||(1477878-1477953)
chr5 (45-110)||(1504866-1504931)
chr5 (45-130)||(1499109-1499194)
chr5 (45-110)||(1509012-1509078)
chr5 (42-129)||(1492041-1492125)
[»] chr7 (6 HSPs)
chr7 (43-130)||(5314980-5315067)
chr7 (43-132)||(5310264-5310353)
chr7 (43-132)||(5284175-5284264)
chr7 (43-132)||(5302363-5302452)
chr7 (45-110)||(46707156-46707221)
chr7 (45-132)||(5289865-5289952)
[»] chr1 (3 HSPs)
chr1 (43-110)||(44128463-44128530)
chr1 (43-110)||(44132668-44132735)
chr1 (43-110)||(44141090-44141157)
[»] chr3 (2 HSPs)
chr3 (43-110)||(37863556-37863623)
chr3 (45-110)||(37859532-37859597)


Alignment Details
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 16 - 258
Target Start/End: Original strand, 24163929 - 24164170
Alignment:
Q  16 aagaaggtgccatataagtgcacaagttaggattctctttcaaaatctcttcggttaggtacatgtatctcctcttgatcatagttttatcacctaaaat 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24163929 aagaaggtgccatataagtgcacaagttaggattctctttcaaaatctcttcggttaggtacatgtatctcctcttgatcatagttttatcacctaaaat 24164028  T
Q  116 agttataaagaaatgacgtaagtacnnnnnnnntgtgttattctaaagataactaagatttgattaatttttcttgcatctctttacacagattagttat 215  Q
    |||||||||||||||||||||||||        ||||||||| |||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||    
T  24164029 agttataaagaaatgacgtaagtac-aaaaaaatgtgttattataaagataacaaagatttgattcatttttcttgcatctctttacacagattagttat 24164127  T
Q  216 aaaagcgtattttattaccgaaatgtatctcctcttgatcatg 258  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  24164128 aaaagcgtattttattaccgaaatgtatctcctcttgatcatg 24164170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 313 - 371
Target Start/End: Original strand, 24164225 - 24164283
Alignment:
Q  313 cgtctgagtgcgacatagtttgattttctcatcttagtgctgtgtagtttgatgttcat 371  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  24164225 cgtctgagtgcgacatagtttgattttctcatcttagtgcggtgtagtttgatgttcat 24164283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 7e-25; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 43 - 129
Target Start/End: Complemental strand, 1482149 - 1482063
Alignment:
Q  43 taggattctctttcaaaatctcttcggttaggtacatgtatctcctcttgatcatagttttatcacctaaaatagttataaagaaat 129  Q
    ||||||| ||||||||||||||||| || || ||||||||||||||||||||||||| |||||||||| || |||||||||||||||    
T  1482149 taggattttctttcaaaatctcttcagtaagatacatgtatctcctcttgatcatagatttatcacctgaagtagttataaagaaat 1482063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 16 - 124
Target Start/End: Complemental strand, 1486653 - 1486545
Alignment:
Q  16 aagaaggtgccatataagtgcacaagttaggattctctttcaaaatctcttcggttaggtacatgtatctcctcttgatcatagttttatcacctaaaat 115  Q
    ||||||||| |||||||||||| || ||||||||||||||||||||  |||| ||| ||||||||||||| ||||||||||| | ||| ||||||||| |    
T  1486653 aagaaggtgtcatataagtgcaaaaattaggattctctttcaaaatagcttctgtttggtacatgtatcttctcttgatcattgatttttcacctaaagt 1486554  T
Q  116 agttataaa 124  Q
    | |||||||    
T  1486553 aattataaa 1486545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 45 - 120
Target Start/End: Complemental strand, 1477953 - 1477878
Alignment:
Q  45 ggattctctttcaaaatctcttcggttaggtacatgtatctcctcttgatcatagttttatcacctaaaatagtta 120  Q
    ||||| ||||||||||| |||||||| || ||||||||||||||||||||||| | |||||||||| || ||||||    
T  1477953 ggattttctttcaaaatttcttcggtaagatacatgtatctcctcttgatcatggatttatcacctgaagtagtta 1477878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 45 - 110
Target Start/End: Complemental strand, 1504931 - 1504866
Alignment:
Q  45 ggattctctttcaaaatctcttcggttaggtacatgtatctcctcttgatcatagttttatcacct 110  Q
    ||||||||||| |||||||| || ||||||||||||||||| ||||| ||||||| ||||||||||    
T  1504931 ggattctcttttaaaatctcctctgttaggtacatgtatcttctcttaatcatagatttatcacct 1504866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 45 - 130
Target Start/End: Complemental strand, 1499194 - 1499109
Alignment:
Q  45 ggattctctttcaaaatctcttcggttaggtacatgtatctcctcttgatcatagttttatcacctaaaatagttataaagaaatg 130  Q
    ||||| ||||||||||||||||| |||| |||||  | |||| || | ||||||| |||||||||||||  |||||||||||||||    
T  1499194 ggattatctttcaaaatctcttctgttaagtacacatgtctcttcctaatcatagatttatcacctaaaggagttataaagaaatg 1499109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 45 - 110
Target Start/End: Complemental strand, 1509078 - 1509012
Alignment:
Q  45 ggattctctttcaaaatctcttcggttaggtacatgtatctcctctt-gatcatagttttatcacct 110  Q
    ||||||||||||||||||||||| || |  ||||||||||||||||| |||||| | ||||||||||    
T  1509078 ggattctctttcaaaatctcttctgtaatatacatgtatctcctcttagatcatcgatttatcacct 1509012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 42 - 129
Target Start/End: Complemental strand, 1492125 - 1492041
Alignment:
Q  42 ttaggattctctttcaaaatctcttcggttaggtacatgtatctcctcttgatcatagttttatcacctaaaatagttataaagaaat 129  Q
    |||||||||||||| |||||||| || ||||| ||||||||||| || |||||||| | ||| |||||| |   ||||||||||||||    
T  1492125 ttaggattctcttttaaaatctcctctgttagatacatgtatcttcttttgatcatggatttgtcacctga---agttataaagaaat 1492041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 4e-23; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 43 - 130
Target Start/End: Complemental strand, 5315067 - 5314980
Alignment:
Q  43 taggattctctttcaaaatctcttcggttaggtacatgtatctcctcttgatcatagttttatcacctaaaatagttataaagaaatg 130  Q
    ||||||| ||||||||||| ||||| ||||| ||||||||||||||||||||||||| |||||||||| || ||||||||| ||||||    
T  5315067 taggattttctttcaaaatttcttctgttagatacatgtatctcctcttgatcatagatttatcacctgaagtagttataatgaaatg 5314980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 43 - 132
Target Start/End: Complemental strand, 5310353 - 5310264
Alignment:
Q  43 taggattctctttcaaaatctcttcggttaggtacatgtatctcctcttgatcatagttttatcacctaaaatagttataaagaaatgac 132  Q
    ||||||| |||||||||||||| || ||||| ||||||||||||||||||||||||| |||||||||| || | ||||||| ||||||||    
T  5310353 taggattttctttcaaaatctcctctgttagatacatgtatctcctcttgatcatagatttatcacctgaagtggttataatgaaatgac 5310264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 43 - 132
Target Start/End: Complemental strand, 5284264 - 5284175
Alignment:
Q  43 taggattctctttcaaaatctcttcggttaggtacatgtatctcctcttgatcatagttttatcacctaaaatagttataaagaaatgac 132  Q
    ||||||| | ||||||||| ||||| ||||| ||||||||||||||||||||||||| |||||||||| || |||||||||  |||||||    
T  5284264 taggattttttttcaaaatttcttctgttagatacatgtatctcctcttgatcatagatttatcacctgaagtagttataataaaatgac 5284175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 43 - 132
Target Start/End: Complemental strand, 5302452 - 5302363
Alignment:
Q  43 taggattctctttcaaaatctcttcggttaggtacatgtatctcctcttgatcatagttttatcacctaaaatagttataaagaaatgac 132  Q
    ||||||| ||||||||||| ||||| ||||| ||||||||||||||||||||||| | |||||||||| || ||||||||| | ||||||    
T  5302452 taggattttctttcaaaatttcttctgttagatacatgtatctcctcttgatcatggatttatcacctgaagtagttataatggaatgac 5302363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 45 - 110
Target Start/End: Original strand, 46707156 - 46707221
Alignment:
Q  45 ggattctctttcaaaatctcttcggttaggtacatgtatctcctcttgatcatagttttatcacct 110  Q
    |||||||||||||||||||| |  ||||||||||||||||||||||||||||||| ||||||||||    
T  46707156 ggattctctttcaaaatctcctatgttaggtacatgtatctcctcttgatcatagatttatcacct 46707221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 45 - 132
Target Start/End: Original strand, 5289865 - 5289952
Alignment:
Q  45 ggattctctttcaaaatctcttcggttaggtacatgtatctcctcttgatcatagttttatcacctaaaatagttataaagaaatgac 132  Q
    ||||| ||||||||||| ||||| ||||| ||||||||||||||||||||||| | |||||||||| || ||||||||| | ||||||    
T  5289865 ggattttctttcaaaatttcttctgttagatacatgtatctcctcttgatcatggatttatcacctgaagtagttataatggaatgac 5289952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 43 - 110
Target Start/End: Complemental strand, 44128530 - 44128463
Alignment:
Q  43 taggattctctttcaaaatctcttcggttaggtacatgtatctcctcttgatcatagttttatcacct 110  Q
    |||||||||||||||||||||| || ||||||||||| ||||||||||||||||||| ||||||||||    
T  44128530 taggattctctttcaaaatctcctctgttaggtacatatatctcctcttgatcatagatttatcacct 44128463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 43 - 110
Target Start/End: Complemental strand, 44132735 - 44132668
Alignment:
Q  43 taggattctctttcaaaatctcttcggttaggtacatgtatctcctcttgatcatagttttatcacct 110  Q
    |||||||||||||||||||||| || ||||||||||| ||||||||||||||||||| ||||||||||    
T  44132735 taggattctctttcaaaatctcctctgttaggtacatatatctcctcttgatcatagatttatcacct 44132668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 43 - 110
Target Start/End: Complemental strand, 44141157 - 44141090
Alignment:
Q  43 taggattctctttcaaaatctcttcggttaggtacatgtatctcctcttgatcatagttttatcacct 110  Q
    |||||||||||||||||||||| || ||||||||||| ||||||||||||||||||| ||||||||||    
T  44141157 taggattctctttcaaaatctcctctgttaggtacatatatctcctcttgatcatagatttatcacct 44141090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 43 - 110
Target Start/End: Original strand, 37863556 - 37863623
Alignment:
Q  43 taggattctctttcaaaatctcttcggttaggtacatgtatctcctcttgatcatagttttatcacct 110  Q
    |||||||||| |||||||||||||| || |  | |||||||||| |||| ||||||| ||||||||||    
T  37863556 taggattctccttcaaaatctcttcagtcaaatgcatgtatctcttcttaatcatagatttatcacct 37863623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 110
Target Start/End: Original strand, 37859532 - 37859597
Alignment:
Q  45 ggattctctttcaaaatctcttcggttaggtacatgtatctcctcttgatcatagttttatcacct 110  Q
    |||||||||||||  |||||||| || | ||||||||||||| |||||||||| |  |||||||||    
T  37859532 ggattctctttcaggatctcttctgtcaagtacatgtatctcttcttgatcattgacttatcacct 37859597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University