View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19368_low_33 (Length: 359)
Name: NF19368_low_33
Description: NF19368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19368_low_33 |
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Alignment Details
Target: chr3 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 16 - 345
Target Start/End: Original strand, 42030753 - 42031082
Alignment:
| Q |
16 |
ataactcacaccacattgaacatcacaacaacctttgtgtaggatgttaaccatcaaccaatcttgccaatccgagatatcaaagaaatgagtcgtgata |
115 |
Q |
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| T |
42030753 |
ataactcacaccacattgaacatcacaacaacctttgtgtaggatgttaaccatcaaccaatcttgccaatccgagatatcaaagaaatgagtcgtgata |
42030852 |
T |
|
| Q |
116 |
cgagggttcaacaacttctaaaattctttcaccactctataatcacgaaatgcatgcatatggtcctcaacaccgttttgacataatagacacgtatgaa |
215 |
Q |
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| T |
42030853 |
cgagggttcaacaacttctaaaattctttcaccactctataatcgcgaaatgcatgcatatggtcctcaacaccgttttgacataatagacacgtatgaa |
42030952 |
T |
|
| Q |
216 |
tattagccatttcctccaacaacacttctcattagttaggagagagacatgagtaagtttccataacaaacattgaattctataaggatttgtccacttc |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42030953 |
tattagccatttcctccaacaacacttctcattagttaggagagagacatgactaagtttccataacaaacattgaattctataaggatttgtccacttc |
42031052 |
T |
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| Q |
316 |
caaataagattgataatacgatgcactcat |
345 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
42031053 |
caaataagattgataatacgatgcactcat |
42031082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 226 - 326
Target Start/End: Complemental strand, 11251822 - 11251721
Alignment:
| Q |
226 |
ttcctccaacaacacttctcattagttaggagagagacatgagtaagtttccataacaaa-cattgaattctataaggatttgtccacttccaaataaga |
324 |
Q |
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||||||| |||| ||||||||| ||||| || || |||| ||||||||||||||||| |||||||||||||||||| |||| |||||||||||| |
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| T |
11251822 |
ttcctccgacaatgcttctcattggttagaagtgacgcatggctaagtttccataacaaaacattgaattctataaggaccattccatttccaaataaga |
11251723 |
T |
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| Q |
325 |
tt |
326 |
Q |
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|| |
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| T |
11251722 |
tt |
11251721 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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