View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19368_low_37 (Length: 341)
Name: NF19368_low_37
Description: NF19368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19368_low_37 |
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| [»] scaffold0001 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 86 - 331
Target Start/End: Original strand, 20051264 - 20051509
Alignment:
| Q |
86 |
gttgaacttactaatttcgtggcttcaacggatacattaagtaaagaaggaactccagtgcactcgaaggaataatcgacacccattccaccacttagtt |
185 |
Q |
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| T |
20051264 |
gttgaacttactaatttcgtggcttcaacggatacattaagtaaagaaggaactccagtgcactcgaaggaataatcgacacccattccaccacttagtt |
20051363 |
T |
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| Q |
186 |
ctttaaccaaatcagaagcagacttatatgaaccactcggatttataaagtgggtcattccgaaagcttctcctttttctctcttcatctcatttttatc |
285 |
Q |
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| T |
20051364 |
ctttaaccaaatcagaagcagacttatatgaaccacttggatttataaagtgggtcattccgaaagcttctcctttttctctcttcatctcatttttatc |
20051463 |
T |
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| Q |
286 |
aaccccaattattttacttgctcccatcattttggctccacctatg |
331 |
Q |
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| T |
20051464 |
aaccccaattattttacttgctcccatcattttggctccacctatg |
20051509 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 5 - 84
Target Start/End: Original strand, 20051154 - 20051233
Alignment:
| Q |
5 |
caagcgaacaaaccaatatcataagatgaagcataacatatcagaaaaattaaccatgtgatcaagatttattcgactca |
84 |
Q |
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| T |
20051154 |
caagcgaacaaaccaatatcataagatgaagcataacatatcacacaaattaaccatgtgatcaagatttattcgactca |
20051233 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 185 - 315
Target Start/End: Original strand, 505381 - 505511
Alignment:
| Q |
185 |
tctttaaccaaatcagaagcagacttatatgaaccactcggatttataaagtgggtcattccgaaagcttctcctttttctctcttcatctcatttttat |
284 |
Q |
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| T |
505381 |
tctttaaccaattctgaagcagatttatcagaatcattagaatttataaaatgggtcatcccaaaagcttctcctttttctctcttcatctcgtttttgt |
505480 |
T |
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| Q |
285 |
caaccccaattattttacttgctcccatcat |
315 |
Q |
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| T |
505481 |
caaccccaattatcttacttgctcccatcat |
505511 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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