View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19368_low_39 (Length: 335)
Name: NF19368_low_39
Description: NF19368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19368_low_39 |
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Alignment Details
Target: chr3 (Bit Score: 264; Significance: 1e-147; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 50 - 325
Target Start/End: Original strand, 17722726 - 17723001
Alignment:
| Q |
50 |
ctattaattatcaatatgtgaatgcagacttttccagtttatcttatataacattattggccttttcacacaattaagagttgtaagaagcaaagtttct |
149 |
Q |
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| T |
17722726 |
ctattaattataaatatgtgaatgcagacttttccagtttatcttatataacattattggccttttcacacaattaagagttgtaagaagcaaagttcct |
17722825 |
T |
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| Q |
150 |
ccacaaaacctataacattgactgatatgctgttaaaatttgcggcttgaaaatcaaattttggatcgacaaatgggtaagtttggagccattcatgcac |
249 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
17722826 |
ccacaaaacctataacattgactgatatgctgttaaaatttgcggcttgaaaatcaaattttggatcgacaaatgggtaaatttggagccattcatgcac |
17722925 |
T |
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| Q |
250 |
atttttcccatattatatttggtggtggccaacaagaacttgacagtggcagaagtgggtttatgaaatgatgatg |
325 |
Q |
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| T |
17722926 |
atttttcccatattatatttggtggtggccaacaagaacttgacagtggcagaagtgggtttatgaaatgatgatg |
17723001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 50 - 325
Target Start/End: Original strand, 19023955 - 19024230
Alignment:
| Q |
50 |
ctattaattatcaatatgtgaatgcagacttttccagtttatcttatataacattattggccttttcacacaattaagagttgtaagaagcaaagtttct |
149 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
19023955 |
ctattaattataaatatgtgaatgcagacttttccagtttatcttatataacattattggccttttcacacaattaagagttgtaagaagcaaagttcct |
19024054 |
T |
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| Q |
150 |
ccacaaaacctataacattgactgatatgctgttaaaatttgcggcttgaaaatcaaattttggatcgacaaatgggtaagtttggagccattcatgcac |
249 |
Q |
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| T |
19024055 |
ccacaaaacctataacattgactgatatgctgttaaaatttgcggcttgaaaatcaaattttggatcgacaaatgggtaaatttggagccattcatgcac |
19024154 |
T |
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| Q |
250 |
atttttcccatattatatttggtggtggccaacaagaacttgacagtggcagaagtgggtttatgaaatgatgatg |
325 |
Q |
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| T |
19024155 |
atttttcccatattatatttggtggtggccaacaagaacttgacagtggcagaagtgggtttatgaaatgatgatg |
19024230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 51 - 324
Target Start/End: Complemental strand, 18114219 - 18113958
Alignment:
| Q |
51 |
tattaattatcaatatgtgaatgcagacttttccagtttatcttatataacattattggccttttcacacaattaagagttgtaagaagcaaagtttctc |
150 |
Q |
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|||||||||||||||||||||||||||||| |||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
18114219 |
tattaattatcaatatgtgaatgcagacttctccattttatcttatataacaatattggccttttcacacaattaagagttgtaagaagcaaagtttgac |
18114120 |
T |
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| Q |
151 |
-cacaaaacctataacattgactgatatgctgttaaaatttgcggcttgaaaatcaaattttggatcgacaaatgggtaagtttggagccattcatgcac |
249 |
Q |
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||| ||| ||||||||||||||||||||||||| |||||| ||||||||||||||| |||||||| |||||||||||||||||| |
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| T |
18114119 |
tcacggaac-------------tgatatgctgttaaaatttgcggctagaaaattaaattttggatcgacggatgggtaaaattggagccattcatgcac |
18114033 |
T |
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| Q |
250 |
atttttcccatattatatttggtggtggccaacaagaacttgacagtggcagaagtgggtttatgaaatgatgat |
324 |
Q |
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| T |
18114032 |
atttttcccatattatatttggtcgttgccaacaaaaacttgacagtggcagaagtgggtttgtgaaatgatgat |
18113958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 112 - 185
Target Start/End: Original strand, 17711568 - 17711641
Alignment:
| Q |
112 |
ttttcacacaattaagagttgtaagaagcaaagtttctccacaaaacctataacattgactgatatgctgttaa |
185 |
Q |
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|||||||| | |||||||||| ||||||||||||||||||||||| | | |||||||||||||||| ||||||| |
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| T |
17711568 |
ttttcacatatttaagagttgcaagaagcaaagtttctccacaaatcatttaacattgactgatatactgttaa |
17711641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 112 - 185
Target Start/End: Original strand, 19012825 - 19012898
Alignment:
| Q |
112 |
ttttcacacaattaagagttgtaagaagcaaagtttctccacaaaacctataacattgactgatatgctgttaa |
185 |
Q |
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|||||||| | |||||||||| ||||||||||||||||||||||| | | |||||||||||||||| ||||||| |
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| T |
19012825 |
ttttcacatatttaagagttgcaagaagcaaagtttctccacaaatcatttaacattgactgatatactgttaa |
19012898 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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