View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19368_low_4 (Length: 661)
Name: NF19368_low_4
Description: NF19368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19368_low_4 |
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| [»] scaffold0015 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 479; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 110 - 645
Target Start/End: Original strand, 28939228 - 28939769
Alignment:
| Q |
110 |
gttgaggcctaagaagttactaggattattatttgtataaattttatggagaaattcaagtacatgttcatataaaaaatcatcgaactgaatcctccac |
209 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28939228 |
gttgaggcctgagaagttactaggattattatttgtataaattttatggagaaattcaagtacatgttcatataaaaaatcatcgaactgaatcctccat |
28939327 |
T |
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| Q |
210 |
aatcaccactatggtgcacccgactatatactgttagattaaaagagagaaaaatcatctcatattctaacaatctacacagccggctatagaggattcg |
309 |
Q |
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| T |
28939328 |
aatcaccactatggtgcacccgactatagactgttagattaaaagagaaaaaaatcatctcataatctaacaatctacacagccggctatagaggattcg |
28939427 |
T |
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| Q |
310 |
ggttaaaaaatcactcaaggtgttggaataagacaaacagcttggcgatttcgatcttgtgtagcgccgcagcctctccggcctaacacgagcctttaga |
409 |
Q |
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| T |
28939428 |
ggttaaaaaatcactcaaggtgttggaataagacgaacagcttggcgatttcgatcttgtgtagcaccgcagcctctccggccaaacacgagcctttaga |
28939527 |
T |
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| Q |
410 |
ttaatccaacgaccgatgtttgaccgaaaagactacaaattttcttatccctcaattattttgaaaatatacataagagaccaacatacagaaaactatt |
509 |
Q |
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| T |
28939528 |
ttaatccaacgaccgatgtttggccgaaaagactacaaattttcttatccctcaattattttgaaaatatacataagagaccaacatacagaaaactatt |
28939627 |
T |
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| Q |
510 |
tcaaaatgaatatgagaatc------tatatagttatggtaaagaagagagaatgaaaatacttttgagattgcaaaaaagattgtcgctgacaaattga |
603 |
Q |
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| T |
28939628 |
tcaaaatgaatatgagaatctatatatatatagttatggtaaagaagagagaatgaaaatacttttgagattgcaaaaaagattgtcactgacaaattga |
28939727 |
T |
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| Q |
604 |
gaagcttcagctccaccatgaccatcataaacaccaataaaa |
645 |
Q |
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| T |
28939728 |
gaagcttcagctccaccatgaccatcataaacaccaataaaa |
28939769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 10 - 82
Target Start/End: Original strand, 28939131 - 28939203
Alignment:
| Q |
10 |
aagaatattggattagtaataataaactcaaaacaaagggtagcttagtgcatgagggttaaatacacatgca |
82 |
Q |
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| T |
28939131 |
aagaaaattggattagtaataataaactcaaaacaaagggtagcttagtgcatgagggttaaatacacatgca |
28939203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 562 - 644
Target Start/End: Original strand, 40327273 - 40327355
Alignment:
| Q |
562 |
atacttttgagattgcaaaaaagattgtcgctgacaaattgagaagcttcagctccaccatgaccatcataaacaccaataaa |
644 |
Q |
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| T |
40327273 |
atactcttgaaattggagaatagattgtcattaacaaactgagaagctgcagttccaccatgaccatcataaacacctataaa |
40327355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 603 - 645
Target Start/End: Original strand, 73516 - 73558
Alignment:
| Q |
603 |
agaagcttcagctccaccatgaccatcataaacaccaataaaa |
645 |
Q |
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| T |
73516 |
agaagcttcaggaccaccatgaccatcataaacaccaacaaaa |
73558 |
T |
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