View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19368_low_41 (Length: 333)
Name: NF19368_low_41
Description: NF19368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19368_low_41 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 4 - 316
Target Start/End: Complemental strand, 39019616 - 39019303
Alignment:
| Q |
4 |
agatggacatcatcaaagtgaaaatttatcaaagttcgtaaaacatagaatgcatgaatgagaccctagttaattgttaagcaagccaagttgagttaat |
103 |
Q |
| |
|
||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39019616 |
agatgtacatcattaaagtgaaaatttatcaaagttcgtaaaacatagaatgcatgaatgagaccctagttaattgttaagcaagccaagttgagttaat |
39019517 |
T |
|
| Q |
104 |
tggcttgggaagnnnnnnnn-aaaagactattcagttatctttagataatagtttctcctctaaataatggaagaaaagacactttttaatataataaca |
202 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39019516 |
tggcttgggaagtttttttttaaaagactattcagttatctttagataatagtttctcctctaaataatggaagaaaagacactttttaatataataaca |
39019417 |
T |
|
| Q |
203 |
aaagtaaaaaagtgcattttggtggatttgtatttctcagttacatataagttgttctccccttatttgttagaagatttcttgtaactttggtttatct |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39019416 |
aaagtaaaaaagtgcattttggtggatttgtatttctcagttacatataagttgttctccccttatttgttagaagatttcttgtaactttggtttatct |
39019317 |
T |
|
| Q |
303 |
taaaacttcctact |
316 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
39019316 |
taaaacttcctact |
39019303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University