View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19368_low_43 (Length: 321)

Name: NF19368_low_43
Description: NF19368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19368_low_43
NF19368_low_43
[»] chr1 (16 HSPs)
chr1 (1-120)||(17015684-17015803)
chr1 (1-117)||(12983194-12983310)
chr1 (1-117)||(45346578-45346694)
chr1 (1-120)||(39242266-39242385)
chr1 (1-119)||(45319985-45320103)
chr1 (26-120)||(27289547-27289641)
chr1 (26-119)||(52382958-52383050)
chr1 (236-304)||(39242516-39242584)
chr1 (237-304)||(45346396-45346463)
chr1 (236-304)||(49410416-49410484)
chr1 (237-304)||(12983425-12983492)
chr1 (236-304)||(47036159-47036227)
chr1 (236-281)||(45319760-45319805)
chr1 (245-304)||(22105524-22105583)
chr1 (236-273)||(17015932-17015969)
chr1 (236-281)||(27289773-27289818)
[»] scaffold0166 (2 HSPs)
scaffold0166 (1-117)||(25410-25526)
scaffold0166 (237-304)||(25224-25291)
[»] chr8 (6 HSPs)
chr8 (1-117)||(533358-533474)
chr8 (237-304)||(533589-533656)
chr8 (236-304)||(13800761-13800829)
chr8 (236-304)||(30089078-30089146)
chr8 (236-281)||(1786639-1786684)
chr8 (236-281)||(30936823-30936868)
[»] chr7 (13 HSPs)
chr7 (1-117)||(45974097-45974213)
chr7 (1-117)||(29244939-29245055)
chr7 (12-117)||(34095458-34095563)
chr7 (26-119)||(19465106-19465199)
chr7 (26-120)||(29830584-29830678)
chr7 (237-304)||(45974328-45974395)
chr7 (236-281)||(34095737-34095782)
chr7 (75-111)||(6443829-6443865)
chr7 (236-280)||(6444048-6444092)
chr7 (237-287)||(29245169-29245219)
chr7 (236-281)||(29263282-29263327)
chr7 (236-281)||(47329550-47329595)
chr7 (236-281)||(19465332-19465377)
[»] chr5 (9 HSPs)
chr5 (1-117)||(24783027-24783143)
chr5 (26-120)||(30628350-30628444)
chr5 (236-304)||(31480581-31480649)
chr5 (237-304)||(24782841-24782908)
chr5 (239-304)||(6768046-6768111)
chr5 (236-304)||(41406113-41406181)
chr5 (236-304)||(1835908-1835976)
chr5 (236-304)||(40321388-40321456)
chr5 (236-281)||(39885721-39885766)
[»] chr4 (20 HSPs)
chr4 (1-117)||(42063372-42063488)
chr4 (1-117)||(20135085-20135201)
chr4 (1-117)||(47028471-47028587)
chr4 (1-117)||(55917704-55917820)
chr4 (26-119)||(4922173-4922266)
chr4 (26-116)||(27295953-27296042)
chr4 (236-304)||(28682959-28683027)
chr4 (47-114)||(28682770-28682837)
chr4 (237-304)||(55917533-55917600)
chr4 (236-304)||(24226991-24227059)
chr4 (241-304)||(20135320-20135383)
chr4 (236-281)||(47028253-47028298)
chr4 (236-281)||(42063156-42063201)
chr4 (1-53)||(28682697-28682749)
chr4 (236-281)||(45988269-45988314)
chr4 (19-110)||(8407410-8407502)
chr4 (75-111)||(45988500-45988536)
chr4 (236-271)||(42980129-42980164)
chr4 (236-281)||(4922399-4922444)
chr4 (236-281)||(27296178-27296223)
[»] chr2 (12 HSPs)
chr2 (1-117)||(14805887-14806003)
chr2 (1-117)||(15332403-15332519)
chr2 (1-115)||(16431540-16431654)
chr2 (1-117)||(17692283-17692399)
chr2 (1-115)||(37259987-37260101)
chr2 (26-119)||(14101634-14101727)
chr2 (237-304)||(16431756-16431823)
chr2 (237-304)||(17692499-17692566)
chr2 (237-304)||(37259803-37259870)
chr2 (237-304)||(14805705-14805772)
chr2 (237-304)||(15332638-15332705)
chr2 (236-281)||(37080611-37080656)
[»] scaffold0662 (2 HSPs)
scaffold0662 (1-117)||(7350-7466)
scaffold0662 (236-281)||(7132-7177)
[»] chr3 (16 HSPs)
chr3 (1-117)||(39831515-39831631)
chr3 (26-119)||(50359822-50359915)
chr3 (26-119)||(50646968-50647061)
chr3 (26-120)||(22427073-22427167)
chr3 (1-108)||(15071373-15071480)
chr3 (237-304)||(39831333-39831400)
chr3 (236-292)||(29835674-29835730)
chr3 (236-304)||(33213536-33213604)
chr3 (236-304)||(12945367-12945436)
chr3 (236-274)||(31654779-31654817)
chr3 (236-281)||(5234611-5234656)
chr3 (236-281)||(20107951-20107996)
chr3 (236-281)||(29702542-29702587)
chr3 (240-281)||(53284152-53284193)
chr3 (236-281)||(55406267-55406312)
chr3 (7-94)||(40558650-40558734)
[»] chr6 (5 HSPs)
chr6 (26-120)||(12945318-12945412)
chr6 (236-296)||(944991-945051)
chr6 (237-281)||(7124487-7124531)
chr6 (75-111)||(7124715-7124751)
chr6 (236-281)||(4181128-4181173)
[»] scaffold0685 (1 HSPs)
scaffold0685 (26-119)||(6970-7062)
[»] scaffold0896 (1 HSPs)
scaffold0896 (237-281)||(1832-1876)
[»] scaffold0285 (1 HSPs)
scaffold0285 (245-281)||(17685-17721)


Alignment Details
Target: chr1 (Bit Score: 108; Significance: 3e-54; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 17015684 - 17015803
Alignment:
Q  1 gaagaaaatattgagattcatgttatttggaggtgtatttgagtaactattttgttttttgttcaataacgaagatgatgaaggtatgaagatggtgatg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  17015684 gaagaaaatattgagattcatgttatttggaggtgtatttgagtagctattttgttttttgttcaataaagaagatgatgaaggtatgaagatggtgatg 17015783  T
Q  101 atgttcataatcttcctggg 120  Q
    ||||||||||||||| ||||    
T  17015784 atgttcataatcttcttggg 17015803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 12983194 - 12983310
Alignment:
Q  1 gaagaaaatattgagattcatgttatttggaggtgtatttgagtaactattttgttttttgttcaataacgaagatgatgaaggtatgaagatggtgatg 100  Q
    |||||||||||||||||||||||||||||||| ||||||||||||  |||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  12983194 gaagaaaatattgagattcatgttatttggagatgtatttgagtagttattttgttttttgttcaataaagaagatgatgaaggtatgaagatggtgatg 12983293  T
Q  101 atgttcataatcttcct 117  Q
    |||||||||||||||||    
T  12983294 atgttcataatcttcct 12983310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 45346694 - 45346578
Alignment:
Q  1 gaagaaaatattgagattcatgttatttggaggtgtatttgagtaactattttgttttttgttcaataacgaagatgatgaaggtatgaagatggtgatg 100  Q
    |||||||||||||||||||||||||||||||| ||||||||||||  |||||| ||||||||||||||| ||||||||||||||||||||||||||||||    
T  45346694 gaagaaaatattgagattcatgttatttggagatgtatttgagtagttattttattttttgttcaataaagaagatgatgaaggtatgaagatggtgatg 45346595  T
Q  101 atgttcataatcttcct 117  Q
    |||||||||||||||||    
T  45346594 atgttcataatcttcct 45346578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 39242266 - 39242385
Alignment:
Q  1 gaagaaaatattgagattcatgttatttggaggtgtatttgagtaactattttgttttttgttcaataacgaagatgatgaaggtatgaagatggtgatg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||| |||||||||||||||||    
T  39242266 gaagaaaatattgagattcatgttatttggaggtgtatttgagtagctattttgttttttgttcaataaagaagatgaagaatgtatgaagatggtgatg 39242365  T
Q  101 atgttcataatcttcctggg 120  Q
    ||||||||| ||||| ||||    
T  39242366 atgttcatagtcttcttggg 39242385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 45320103 - 45319985
Alignment:
Q  1 gaagaaaatattgagattcatgttatttggaggtgtatttgagtaactattttgttttttgttcaataacgaagatgatgaaggtatgaagatggtgatg 100  Q
    ||||| |||||||||||| ||| |||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||    
T  45320103 gaagataatattgagatttatgctatttggaggtgtatttgagtagctattttgatttttgttcaataaagaagatgatgaaggtatgaagatggtgatg 45320004  T
Q  101 atgttcataatcttcctgg 119  Q
    |||||||||||||||||||    
T  45320003 atgttcataatcttcctgg 45319985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 26 - 120
Target Start/End: Original strand, 27289547 - 27289641
Alignment:
Q  26 tttggaggtgtatttgagtaactattttgttttttgttcaataacgaagatgatgaaggtatgaagatggtgatgatgttcataatcttcctggg 120  Q
    ||||||||||  |||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||    
T  27289547 tttggaggtgattttgagtagctattttgttttttgttcaataaagaagatgatgaaggtatgaatatggtgatgatgttcataattttcctggg 27289641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 26 - 119
Target Start/End: Complemental strand, 52383050 - 52382958
Alignment:
Q  26 tttggaggtgtatttgagtaactattttgttttttgttcaataacgaagatgatgaaggtatgaagatggtgatgatgttcataatcttcctgg 119  Q
    |||||||||| ||| ||||| ||||||||||||||||||||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||    
T  52383050 tttggaggtgaattagagtagctattttgttttttgttcaataaagaa-atgatgaaggtatgaacatggtgatgatgttcataatcttcctgg 52382958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 236 - 304
Target Start/End: Original strand, 39242516 - 39242584
Alignment:
Q  236 caacacaataacactagtgaggtgcttaatctgatggttcaaaaaagctagtctacggtggtacatatt 304  Q
    |||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||    
T  39242516 caacacaataacactagtgaggtgtttaatctgatggttcaaaaaagttagtctacggtggtacatatt 39242584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 237 - 304
Target Start/End: Complemental strand, 45346463 - 45346396
Alignment:
Q  237 aacacaataacactagtgaggtgcttaatctgatggttcaaaaaagctagtctacggtggtacatatt 304  Q
    |||||||||||||||||||  ||||||||||||| |||||||||||||||||||||||||||||||||    
T  45346463 aacacaataacactagtgaattgcttaatctgatagttcaaaaaagctagtctacggtggtacatatt 45346396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 236 - 304
Target Start/End: Original strand, 49410416 - 49410484
Alignment:
Q  236 caacacaataacactagtgaggtgcttaatctgatggttcaaaaaagctagtctacggtggtacatatt 304  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||    
T  49410416 caacacaatagcactagtgaggtgcttaatctgatggttcaaaaaagctagtatacagtggaacatatt 49410484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 237 - 304
Target Start/End: Original strand, 12983425 - 12983492
Alignment:
Q  237 aacacaataacactagtgaggtgcttaatctgatggttcaaaaaagctagtctacggtggtacatatt 304  Q
    |||||||||||||||||||  ||||||||||||| |||||||||||||| ||||||||||||||||||    
T  12983425 aacacaataacactagtgaattgcttaatctgatagttcaaaaaagctaatctacggtggtacatatt 12983492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 236 - 304
Target Start/End: Original strand, 47036159 - 47036227
Alignment:
Q  236 caacacaataacactagtgaggtgcttaatctgatggttcaaaaaagctagtctacggtggtacatatt 304  Q
    |||||||||||||||| ||| ||| |||||||||||||||||||||| ||||||||| ||| |||||||    
T  47036159 caacacaataacactattgatgtgtttaatctgatggttcaaaaaagatagtctacgatggaacatatt 47036227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 236 - 281
Target Start/End: Complemental strand, 45319805 - 45319760
Alignment:
Q  236 caacacaataacactagtgaggtgcttaatctgatggttcaaaaaa 281  Q
    |||||||||||||||||||||||||||||| |||| ||||||||||    
T  45319805 caacacaataacactagtgaggtgcttaatttgatagttcaaaaaa 45319760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 245 - 304
Target Start/End: Complemental strand, 22105583 - 22105524
Alignment:
Q  245 aacactagtgaggtgcttaatctgatggttcaaaaaagctagtctacggtggtacatatt 304  Q
    ||||||||||| |||||||||||||| ||||||||||| ||||||| ||| | |||||||    
T  22105583 aacactagtgatgtgcttaatctgatagttcaaaaaagttagtctatggtagaacatatt 22105524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 273
Target Start/End: Original strand, 17015932 - 17015969
Alignment:
Q  236 caacacaataacactagtgaggtgcttaatctgatggt 273  Q
    |||||||||||||||||||||||| ||||| |||||||    
T  17015932 caacacaataacactagtgaggtgtttaatatgatggt 17015969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 281
Target Start/End: Original strand, 27289773 - 27289818
Alignment:
Q  236 caacacaataacactagtgaggtgcttaatctgatggttcaaaaaa 281  Q
    |||||||||||||||||||| ||  ||||||||||| |||||||||    
T  27289773 caacacaataacactagtgaagtttttaatctgatgattcaaaaaa 27289818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166 (Bit Score: 101; Significance: 5e-50; HSPs: 2)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 25526 - 25410
Alignment:
Q  1 gaagaaaatattgagattcatgttatttggaggtgtatttgagtaactattttgttttttgttcaataacgaagatgatgaaggtatgaagatggtgatg 100  Q
    |||||||||||||||||||||||||||||||| ||||||||||||  |||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  25526 gaagaaaatattgagattcatgttatttggagatgtatttgagtagttattttgttttttgttcaataaagaagatgatgaaggtatgaagatggtgatg 25427  T
Q  101 atgttcataatcttcct 117  Q
    |||||||||||||||||    
T  25426 atgttcataatcttcct 25410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 237 - 304
Target Start/End: Complemental strand, 25291 - 25224
Alignment:
Q  237 aacacaataacactagtgaggtgcttaatctgatggttcaaaaaagctagtctacggtggtacatatt 304  Q
    |||||||||||||||||||  ||||||||||||| |||||||||||||||||||||||||| ||||||    
T  25291 aacacaataacactagtgaattgcttaatctgatagttcaaaaaagctagtctacggtggtgcatatt 25224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 101; Significance: 5e-50; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 533358 - 533474
Alignment:
Q  1 gaagaaaatattgagattcatgttatttggaggtgtatttgagtaactattttgttttttgttcaataacgaagatgatgaaggtatgaagatggtgatg 100  Q
    |||||||||||||||||||||||||||||||| ||||||||||||  |||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  533358 gaagaaaatattgagattcatgttatttggagatgtatttgagtagttattttgttttttgttcaataaagaagatgatgaaggtatgaagatggtgatg 533457  T
Q  101 atgttcataatcttcct 117  Q
    |||||||||||||||||    
T  533458 atgttcataatcttcct 533474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 237 - 304
Target Start/End: Original strand, 533589 - 533656
Alignment:
Q  237 aacacaataacactagtgaggtgcttaatctgatggttcaaaaaagctagtctacggtggtacatatt 304  Q
    |||||||||||||||||||  ||||||||||||| |||||||||||||||||||||||||||||||||    
T  533589 aacacaataacactagtgaattgcttaatctgatagttcaaaaaagctagtctacggtggtacatatt 533656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 236 - 304
Target Start/End: Complemental strand, 13800829 - 13800761
Alignment:
Q  236 caacacaataacactagtgaggtgcttaatctgatggttcaaaaaagctagtctacggtggtacatatt 304  Q
    ||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| ||| |||||||    
T  13800829 caacacaataacattagtgaggtgtttaatctgatggttcaaaaaagctagtctacgatggaacatatt 13800761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 236 - 304
Target Start/End: Original strand, 30089078 - 30089146
Alignment:
Q  236 caacacaataacactagtgaggtgcttaatctgatggttcaaaaaagctagtctacggtggtacatatt 304  Q
    ||||| |||||||||||||| ||| |||||||||||||||||||||  ||||||||||||| |||||||    
T  30089078 caacaaaataacactagtgaagtgtttaatctgatggttcaaaaaaattagtctacggtggaacatatt 30089146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 236 - 281
Target Start/End: Complemental strand, 1786684 - 1786639
Alignment:
Q  236 caacacaataacactagtgaggtgcttaatctgatggttcaaaaaa 281  Q
    ||||||||||||||||||||||||||||||| ||| ||||||||||    
T  1786684 caacacaataacactagtgaggtgcttaatccgatagttcaaaaaa 1786639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 236 - 281
Target Start/End: Complemental strand, 30936868 - 30936823
Alignment:
Q  236 caacacaataacactagtgaggtgcttaatctgatggttcaaaaaa 281  Q
    |||||||||||||  ||||||||||||||| |||||||||||||||    
T  30936868 caacacaataacaacagtgaggtgcttaatttgatggttcaaaaaa 30936823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 101; Significance: 5e-50; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 45974097 - 45974213
Alignment:
Q  1 gaagaaaatattgagattcatgttatttggaggtgtatttgagtaactattttgttttttgttcaataacgaagatgatgaaggtatgaagatggtgatg 100  Q
    |||||||||||||||||||||||||||||||| ||||||||||||  |||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  45974097 gaagaaaatattgagattcatgttatttggagatgtatttgagtagttattttgttttttgttcaataaagaagatgatgaaggtatgaagatggtgatg 45974196  T
Q  101 atgttcataatcttcct 117  Q
    |||||||||||||||||    
T  45974197 atgttcataatcttcct 45974213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 29244939 - 29245055
Alignment:
Q  1 gaagaaaatattgagattcatgttatttggaggtgtatttgagtaactattttgttttttgttcaataacgaagatgatgaaggtatgaagatggtgatg 100  Q
    |||||||||||||||||||||||||||||||| ||||||||||||  ||||||||||||||||||||||  |||||||||||||||||||||||||||||    
T  29244939 gaagaaaatattgagattcatgttatttggagatgtatttgagtagttattttgttttttgttcaataaaaaagatgatgaaggtatgaagatggtgatg 29245038  T
Q  101 atgttcataatcttcct 117  Q
    |||||||||||||||||    
T  29245039 atgttcataatcttcct 29245055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 12 - 117
Target Start/End: Original strand, 34095458 - 34095563
Alignment:
Q  12 tgagattcatgttatttggaggtgtatttgagtaactattttgttttttgttcaataacgaagatgatgaaggtatgaagatggtgatgatgttcataat 111  Q
    |||||||||||||||||| ||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||| |||||||||||||    
T  34095458 tgagattcatgttatttgtaggtgtatttgagtagctattttgatttttgttcaataaagaagatgatgaaggtatgaagatggtggtgatgttcataat 34095557  T
Q  112 cttcct 117  Q
    ||||||    
T  34095558 cttcct 34095563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 26 - 119
Target Start/End: Original strand, 19465106 - 19465199
Alignment:
Q  26 tttggaggtgtatttgagtaactattttgttttttgttcaataacgaagatgatgaaggtatgaagatggtgatgatgttcataatcttcctgg 119  Q
    |||||||||| ||| ||||| ||||||||||||||||||||||| |||||||||||||||||||| || |||||||||||||||||||||||||    
T  19465106 tttggaggtgaattagagtagctattttgttttttgttcaataaagaagatgatgaaggtatgaacatagtgatgatgttcataatcttcctgg 19465199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 26 - 120
Target Start/End: Complemental strand, 29830678 - 29830584
Alignment:
Q  26 tttggaggtgtatttgagtaactattttgttttttgttcaataacgaagatgatgaaggtatgaagatggtgatgatgttcataatcttcctggg 120  Q
    ||||| |||| ||| ||||| ||||||||||||||||||||||| |||||||||||||||||||| |||| ||||||||||||||||||||||||    
T  29830678 tttggtggtgaattagagtagctattttgttttttgttcaataaagaagatgatgaaggtatgaacatggcgatgatgttcataatcttcctggg 29830584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 237 - 304
Target Start/End: Original strand, 45974328 - 45974395
Alignment:
Q  237 aacacaataacactagtgaggtgcttaatctgatggttcaaaaaagctagtctacggtggtacatatt 304  Q
    |||||||||||||||||||  ||||||||||||| |||||||||||||||||||||||||||||||||    
T  45974328 aacacaataacactagtgaattgcttaatctgatagttcaaaaaagctagtctacggtggtacatatt 45974395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 236 - 281
Target Start/End: Original strand, 34095737 - 34095782
Alignment:
Q  236 caacacaataacactagtgaggtgcttaatctgatggttcaaaaaa 281  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||    
T  34095737 caacacaataacactagtgagatgcttaatctgatggttcaaaaaa 34095782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 75 - 111
Target Start/End: Original strand, 6443829 - 6443865
Alignment:
Q  75 atgatgaaggtatgaagatggtgatgatgttcataat 111  Q
    |||||||||||||||||||||||||||||||||||||    
T  6443829 atgatgaaggtatgaagatggtgatgatgttcataat 6443865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 236 - 280
Target Start/End: Original strand, 6444048 - 6444092
Alignment:
Q  236 caacacaataacactagtgaggtgcttaatctgatggttcaaaaa 280  Q
    |||||||||||||||||||||||||||||| |||||||| |||||    
T  6444048 caacacaataacactagtgaggtgcttaatttgatggttaaaaaa 6444092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 237 - 287
Target Start/End: Original strand, 29245169 - 29245219
Alignment:
Q  237 aacacaataacactagtgaggtgcttaatctgatggttcaaaaaagctagt 287  Q
    |||||| ||||||||||||  ||||||||||||| ||||||||||||||||    
T  29245169 aacacagtaacactagtgaattgcttaatctgatagttcaaaaaagctagt 29245219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 236 - 281
Target Start/End: Original strand, 29263282 - 29263327
Alignment:
Q  236 caacacaataacactagtgaggtgcttaatctgatggttcaaaaaa 281  Q
    |||||||||||||  ||||||||||||||| |||||||||||||||    
T  29263282 caacacaataacaacagtgaggtgcttaatttgatggttcaaaaaa 29263327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 236 - 281
Target Start/End: Original strand, 47329550 - 47329595
Alignment:
Q  236 caacacaataacactagtgaggtgcttaatctgatggttcaaaaaa 281  Q
    ||||||||||| ||||||||||| ||||||| ||||||||||||||    
T  47329550 caacacaataagactagtgaggtacttaatccgatggttcaaaaaa 47329595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 281
Target Start/End: Original strand, 19465332 - 19465377
Alignment:
Q  236 caacacaataacactagtgaggtgcttaatctgatggttcaaaaaa 281  Q
    |||||||||||||||||||| ||| |||||| |||| |||||||||    
T  19465332 caacacaataacactagtgaagtgtttaatccgatgattcaaaaaa 19465377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 101; Significance: 5e-50; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 24783143 - 24783027
Alignment:
Q  1 gaagaaaatattgagattcatgttatttggaggtgtatttgagtaactattttgttttttgttcaataacgaagatgatgaaggtatgaagatggtgatg 100  Q
    |||||||||||||||||||||||||||||||| ||||||||||||  |||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  24783143 gaagaaaatattgagattcatgttatttggagatgtatttgagtagttattttgttttttgttcaataaagaagatgatgaaggtatgaagatggtgatg 24783044  T
Q  101 atgttcataatcttcct 117  Q
    |||||||||||||||||    
T  24783043 atgttcataatcttcct 24783027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 26 - 120
Target Start/End: Original strand, 30628350 - 30628444
Alignment:
Q  26 tttggaggtgtatttgagtaactattttgttttttgttcaataacgaagatgatgaaggtatgaagatggtgatgatgttcataatcttcctggg 120  Q
    |||||||||| ||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||    
T  30628350 tttggaggtgaatttgagtagctattttgttttttgttcaataaagaagatgatgaaggtatgaacatggtgatgatgttcataatcttcctggg 30628444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 236 - 304
Target Start/End: Complemental strand, 31480649 - 31480581
Alignment:
Q  236 caacacaataacactagtgaggtgcttaatctgatggttcaaaaaagctagtctacggtggtacatatt 304  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| |||||||    
T  31480649 caacacaataacattagtgaggtgcttaatctgatggttcaaaaaagctagtctacgatggaacatatt 31480581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 237 - 304
Target Start/End: Complemental strand, 24782908 - 24782841
Alignment:
Q  237 aacacaataacactagtgaggtgcttaatctgatggttcaaaaaagctagtctacggtggtacatatt 304  Q
    |||||||||||||||||||  ||||||||||||| |||||||||||||||||||||||||| ||||||    
T  24782908 aacacaataacactagtgaattgcttaatctgatagttcaaaaaagctagtctacggtggtgcatatt 24782841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 239 - 304
Target Start/End: Complemental strand, 6768111 - 6768046
Alignment:
Q  239 cacaataacactagtgaggtgcttaatctgatggttcaaaaaagctagtctacggtggtacatatt 304  Q
    ||||||| ||||||||||||| ||||||||||||||||||||||||||| |||||||| |||||||    
T  6768111 cacaatagcactagtgaggtgtttaatctgatggttcaaaaaagctagtttacggtggaacatatt 6768046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 236 - 304
Target Start/End: Complemental strand, 41406181 - 41406113
Alignment:
Q  236 caacacaataacactagtgaggtgcttaatctgatggttcaaaaaagctagtctacggtggtacatatt 304  Q
    |||||| |||||| |||||| |||||||||||||||||||||||||| ||||||||||||| |||||||    
T  41406181 caacacgataacattagtgatgtgcttaatctgatggttcaaaaaagttagtctacggtggaacatatt 41406113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 236 - 304
Target Start/End: Original strand, 1835908 - 1835976
Alignment:
Q  236 caacacaataacactagtgaggtgcttaatctgatggttcaaaaaagctagtctacggtggtacatatt 304  Q
    |||||| |||||| |||||| ||| |||||||||||||||||||||| ||||||||||||| |||||||    
T  1835908 caacacgataacattagtgatgtgtttaatctgatggttcaaaaaagttagtctacggtggaacatatt 1835976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 236 - 304
Target Start/End: Original strand, 40321388 - 40321456
Alignment:
Q  236 caacacaataacactagtgaggtgcttaatctgatggttcaaaaaagctagtctacggtggtacatatt 304  Q
    |||||| |||||| |||||| ||| |||||||||||||||||||||| ||||||||||||| |||||||    
T  40321388 caacacgataacattagtgatgtgtttaatctgatggttcaaaaaagttagtctacggtggaacatatt 40321456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 236 - 281
Target Start/End: Original strand, 39885721 - 39885766
Alignment:
Q  236 caacacaataacactagtgaggtgcttaatctgatggttcaaaaaa 281  Q
    ||||||||||| |||||||||||| |||||||||| ||||||||||    
T  39885721 caacacaataatactagtgaggtgtttaatctgatagttcaaaaaa 39885766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 101; Significance: 5e-50; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 42063488 - 42063372
Alignment:
Q  1 gaagaaaatattgagattcatgttatttggaggtgtatttgagtaactattttgttttttgttcaataacgaagatgatgaaggtatgaagatggtgatg 100  Q
    ||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||    
T  42063488 gaagataatattgagattcatgttatttggaggtgtatttgagtagctattttgatttttgttcaataaagaagatgatgaaggtatgaagatggtgatg 42063389  T
Q  101 atgttcataatcttcct 117  Q
    |||||||||||||||||    
T  42063388 atgttcataatcttcct 42063372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 20135085 - 20135201
Alignment:
Q  1 gaagaaaatattgagattcatgttatttggaggtgtatttgagtaactattttgttttttgttcaataacgaagatgatgaaggtatgaagatggtgatg 100  Q
    |||||||||||||||||||||||||||||||| ||||||||||||  |||||||||||||||||||||| ||| ||||||||||||||||||||||||||    
T  20135085 gaagaaaatattgagattcatgttatttggagatgtatttgagtagttattttgttttttgttcaataaagaaaatgatgaaggtatgaagatggtgatg 20135184  T
Q  101 atgttcataatcttcct 117  Q
    |||||||||||||||||    
T  20135185 atgttcataatcttcct 20135201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 47028587 - 47028471
Alignment:
Q  1 gaagaaaatattgagattcatgttatttggaggtgtatttgagtaactattttgttttttgttcaataacgaagatgatgaaggtatgaagatggtgatg 100  Q
    ||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||    
T  47028587 gaagataatattgagattcatgttatttggaggtgtatttgagtagctattttgatttttgttcaataaagaagatgatgaaggtatgaagatggtgatg 47028488  T
Q  101 atgttcataatcttcct 117  Q
    |||||||||| ||||||    
T  47028487 atgttcataaccttcct 47028471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 55917820 - 55917704
Alignment:
Q  1 gaagaaaatattgagattcatgttatttggaggtgtatttgagtaactattttgttttttgttcaataacgaagatgatgaaggtatgaagatggtgatg 100  Q
    |||||||||||||||||||||||||||||||| ||||||||||||  ||||||||||||||||||||||  |||||||||||||||||||||||||||||    
T  55917820 gaagaaaatattgagattcatgttatttggagatgtatttgagtagttattttgttttttgttcaataaaaaagatgatgaaggtatgaagatggtgatg 55917721  T
Q  101 atgttcataatcttcct 117  Q
    |||||||||||||||||    
T  55917720 atgttcataatcttcct 55917704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 26 - 119
Target Start/End: Original strand, 4922173 - 4922266
Alignment:
Q  26 tttggaggtgtatttgagtaactattttgttttttgttcaataacgaagatgatgaaggtatgaagatggtgatgatgttcataatcttcctgg 119  Q
    |||| ||||| ||| ||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  4922173 tttgaaggtgaattagagtagctattttgttttttgttcaataaagaagatgatgaaggtatgaacatggtgatgatgttcataatcttcctgg 4922266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 26 - 116
Target Start/End: Original strand, 27295953 - 27296042
Alignment:
Q  26 tttggaggtgtatttgagtaactattttgttttttgttcaataacgaagatgatgaaggtatgaagatggtgatgatgttcataatcttcc 116  Q
    |||||||||| ||| ||||| ||||||||||||||||||||||| ||| |||||||||||||||| |||||||||||||||||||||||||    
T  27295953 tttggaggtgaattagagtagctattttgttttttgttcaataaagaa-atgatgaaggtatgaacatggtgatgatgttcataatcttcc 27296042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 236 - 304
Target Start/End: Original strand, 28682959 - 28683027
Alignment:
Q  236 caacacaataacactagtgaggtgcttaatctgatggttcaaaaaagctagtctacggtggtacatatt 304  Q
    ||||||||||||||||||||  ||||||||| |||||||||||||||||| ||||||||||||||||||    
T  28682959 caacacaataacactagtgatttgcttaatccgatggttcaaaaaagctaatctacggtggtacatatt 28683027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 47 - 114
Target Start/End: Original strand, 28682770 - 28682837
Alignment:
Q  47 ctattttgttttttgttcaataacgaagatgatgaaggtatgaagatggtgatgatgttcataatctt 114  Q
    |||||||||||||| |||||||| ||||||||| ||||||| ||||||||||||||||||||||||||    
T  28682770 ctattttgttttttattcaataaagaagatgattaaggtatcaagatggtgatgatgttcataatctt 28682837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 237 - 304
Target Start/End: Complemental strand, 55917600 - 55917533
Alignment:
Q  237 aacacaataacactagtgaggtgcttaatctgatggttcaaaaaagctagtctacggtggtacatatt 304  Q
    |||||||||||||||||||  ||||||||||||| |||||||||||||||||||||||||| ||||||    
T  55917600 aacacaataacactagtgaattgcttaatctgatagttcaaaaaagctagtctacggtggtgcatatt 55917533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 236 - 304
Target Start/End: Complemental strand, 24227059 - 24226991
Alignment:
Q  236 caacacaataacactagtgaggtgcttaatctgatggttcaaaaaagctagtctacggtggtacatatt 304  Q
    |||||| |||||| |||||| |||||||||||||||||||||||||| ||||||||||||| |||||||    
T  24227059 caacacgataacattagtgatgtgcttaatctgatggttcaaaaaagttagtctacggtggaacatatt 24226991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 241 - 304
Target Start/End: Original strand, 20135320 - 20135383
Alignment:
Q  241 caataacactagtgaggtgcttaatctgatggttcaaaaaagctagtctacggtggtacatatt 304  Q
    |||||||||||||||  ||||||||||||| ||||||||||| |||||||||||||||||||||    
T  20135320 caataacactagtgaattgcttaatctgatagttcaaaaaagttagtctacggtggtacatatt 20135383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 236 - 281
Target Start/End: Complemental strand, 47028298 - 47028253
Alignment:
Q  236 caacacaataacactagtgaggtgcttaatctgatggttcaaaaaa 281  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  47028298 caacacaataacactagtgaggtgcttaatctgatggttcaaaaaa 47028253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 236 - 281
Target Start/End: Complemental strand, 42063201 - 42063156
Alignment:
Q  236 caacacaataacactagtgaggtgcttaatctgatggttcaaaaaa 281  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||    
T  42063201 caacacaataacactagtgagatgcttaatctgatggttcaaaaaa 42063156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 28682697 - 28682749
Alignment:
Q  1 gaagaaaatattgagattcatgttatttggaggtgtatttgagtaactatttt 53  Q
    ||||||||||||||||||||| |||||||||| |||||||||||| |||||||    
T  28682697 gaagaaaatattgagattcatattatttggagatgtatttgagtatctatttt 28682749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 236 - 281
Target Start/End: Complemental strand, 45988314 - 45988269
Alignment:
Q  236 caacacaataacactagtgaggtgcttaatctgatggttcaaaaaa 281  Q
    |||||||||||||||||||||||||||||| |||||||| ||||||    
T  45988314 caacacaataacactagtgaggtgcttaatttgatggtttaaaaaa 45988269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 19 - 110
Target Start/End: Complemental strand, 8407502 - 8407410
Alignment:
Q  19 catgttatttggaggtgtatttgagtaactatt-ttgttttttgttcaataacgaagatgatgaaggtatgaagatggtgatgatgttcataa 110  Q
    |||||||||||||||||||||| |||||  ||| || ||||||||| || || ||||||||||||| |||||||||| |   |||||||||||    
T  8407502 catgttatttggaggtgtatttcagtaaacattattattttttgtttaagaaagaagatgatgaagatatgaagatgattgagatgttcataa 8407410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 75 - 111
Target Start/End: Complemental strand, 45988536 - 45988500
Alignment:
Q  75 atgatgaaggtatgaagatggtgatgatgttcataat 111  Q
    |||||||||||||||||||||||||||||||||||||    
T  45988536 atgatgaaggtatgaagatggtgatgatgttcataat 45988500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 236 - 271
Target Start/End: Original strand, 42980129 - 42980164
Alignment:
Q  236 caacacaataacactagtgaggtgcttaatctgatg 271  Q
    ||||| ||||||||||||||||||||||||||||||    
T  42980129 caacataataacactagtgaggtgcttaatctgatg 42980164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 281
Target Start/End: Original strand, 4922399 - 4922444
Alignment:
Q  236 caacacaataacactagtgaggtgcttaatctgatggttcaaaaaa 281  Q
    |||||||||||||||||||| ||| |||||| |||| |||||||||    
T  4922399 caacacaataacactagtgaagtgtttaatccgatgattcaaaaaa 4922444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 281
Target Start/End: Original strand, 27296178 - 27296223
Alignment:
Q  236 caacacaataacactagtgaggtgcttaatctgatggttcaaaaaa 281  Q
    |||||||||||||||||||| ||| |||||| |||| |||||||||    
T  27296178 caacacaataacactagtgaagtgtttaatccgatgattcaaaaaa 27296223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 101; Significance: 5e-50; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 14806003 - 14805887
Alignment:
Q  1 gaagaaaatattgagattcatgttatttggaggtgtatttgagtaactattttgttttttgttcaataacgaagatgatgaaggtatgaagatggtgatg 100  Q
    |||||||||||||||||||||||||||||||| ||||||||||||  |||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  14806003 gaagaaaatattgagattcatgttatttggagatgtatttgagtagttattttgttttttgttcaataaagaagatgatgaaggtatgaagatggtgatg 14805904  T
Q  101 atgttcataatcttcct 117  Q
    |||||||||||||||||    
T  14805903 atgttcataatcttcct 14805887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 15332403 - 15332519
Alignment:
Q  1 gaagaaaatattgagattcatgttatttggaggtgtatttgagtaactattttgttttttgttcaataacgaagatgatgaaggtatgaagatggtgatg 100  Q
    |||||||||||||||||||||||||||||||| ||||||||||||  |||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  15332403 gaagaaaatattgagattcatgttatttggagatgtatttgagtagttattttgttttttgttcaataaagaagatgatgaaggtatgaagatggtgatg 15332502  T
Q  101 atgttcataatcttcct 117  Q
    |||||||||||||||||    
T  15332503 atgttcataatcttcct 15332519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 16431540 - 16431654
Alignment:
Q  1 gaagaaaatattgagattcatgttatttggaggtgtatttgagtaactattttgttttttgttcaataacgaagatgatgaaggtatgaagatggtgatg 100  Q
    |||||||||||||||||||||||||||||||| ||||||||||||  |||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  16431540 gaagaaaatattgagattcatgttatttggagatgtatttgagtagttattttgttttttgttcaataaagaagatgatgaaggtatgaagatggtgatg 16431639  T
Q  101 atgttcataatcttc 115  Q
    |||||||||||||||    
T  16431640 atgttcataatcttc 16431654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 17692283 - 17692399
Alignment:
Q  1 gaagaaaatattgagattcatgttatttggaggtgtatttgagtaactattttgttttttgttcaataacgaagatgatgaaggtatgaagatggtgatg 100  Q
    |||||||||||||||||||||||||||||||| ||||||||||||  |||||||||||||||||||||| ||||||||||||||||||||||||| ||||    
T  17692283 gaagaaaatattgagattcatgttatttggagatgtatttgagtagttattttgttttttgttcaataaagaagatgatgaaggtatgaagatggcgatg 17692382  T
Q  101 atgttcataatcttcct 117  Q
    |||||||||||||||||    
T  17692383 atgttcataatcttcct 17692399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 37260101 - 37259987
Alignment:
Q  1 gaagaaaatattgagattcatgttatttggaggtgtatttgagtaactattttgttttttgttcaataacgaagatgatgaaggtatgaagatggtgatg 100  Q
    |||||||||||||||||||||||||||||||| ||||||||||||  |||||||||||||||||||||| |||||||||||| |||||||||||||||||    
T  37260101 gaagaaaatattgagattcatgttatttggagatgtatttgagtagttattttgttttttgttcaataaagaagatgatgaacgtatgaagatggtgatg 37260002  T
Q  101 atgttcataatcttc 115  Q
    |||||||||||||||    
T  37260001 atgttcataatcttc 37259987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 26 - 119
Target Start/End: Original strand, 14101634 - 14101727
Alignment:
Q  26 tttggaggtgtatttgagtaactattttgttttttgttcaataacgaagatgatgaaggtatgaagatggtgatgatgttcataatcttcctgg 119  Q
    |||||||||| ||| ||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  14101634 tttggaggtgaattagagtagctattttgttttttgttcaataaagaagatgatgaaggtatgaacatggtgatgatgttcataatcttcctgg 14101727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 237 - 304
Target Start/End: Original strand, 16431756 - 16431823
Alignment:
Q  237 aacacaataacactagtgaggtgcttaatctgatggttcaaaaaagctagtctacggtggtacatatt 304  Q
    |||||||||||||||||||  ||||||||||||| |||||||||||||||||||||||||||||||||    
T  16431756 aacacaataacactagtgaattgcttaatctgatagttcaaaaaagctagtctacggtggtacatatt 16431823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 237 - 304
Target Start/End: Original strand, 17692499 - 17692566
Alignment:
Q  237 aacacaataacactagtgaggtgcttaatctgatggttcaaaaaagctagtctacggtggtacatatt 304  Q
    |||||||||||||||||||  ||||||||||||| |||||||||||||||||||||||||||||||||    
T  17692499 aacacaataacactagtgaattgcttaatctgatagttcaaaaaagctagtctacggtggtacatatt 17692566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 237 - 304
Target Start/End: Complemental strand, 37259870 - 37259803
Alignment:
Q  237 aacacaataacactagtgaggtgcttaatctgatggttcaaaaaagctagtctacggtggtacatatt 304  Q
    |||||||||||||||||||  ||||||||||||| |||||||||||||||||||||||||||||||||    
T  37259870 aacacaataacactagtgaattgcttaatctgatagttcaaaaaagctagtctacggtggtacatatt 37259803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 237 - 304
Target Start/End: Complemental strand, 14805772 - 14805705
Alignment:
Q  237 aacacaataacactagtgaggtgcttaatctgatggttcaaaaaagctagtctacggtggtacatatt 304  Q
    |||||||||||||||||||  || |||||||||| |||||||||||||||||||||||||||||||||    
T  14805772 aacacaataacactagtgaattgtttaatctgatagttcaaaaaagctagtctacggtggtacatatt 14805705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 237 - 304
Target Start/End: Original strand, 15332638 - 15332705
Alignment:
Q  237 aacacaataacactagtgaggtgcttaatctgatggttcaaaaaagctagtctacggtggtacatatt 304  Q
    |||||||||||||||||||  ||||||||||||| |||||||||||||||||||||||||| ||||||    
T  15332638 aacacaataacactagtgaattgcttaatctgatagttcaaaaaagctagtctacggtggtgcatatt 15332705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 236 - 281
Target Start/End: Original strand, 37080611 - 37080656
Alignment:
Q  236 caacacaataacactagtgaggtgcttaatctgatggttcaaaaaa 281  Q
    ||||||||||| ||||||||||| ||||||| ||||||||||||||    
T  37080611 caacacaataagactagtgaggtacttaatccgatggttcaaaaaa 37080656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0662 (Bit Score: 97; Significance: 1e-47; HSPs: 2)
Name: scaffold0662
Description:

Target: scaffold0662; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 7466 - 7350
Alignment:
Q  1 gaagaaaatattgagattcatgttatttggaggtgtatttgagtaactattttgttttttgttcaataacgaagatgatgaaggtatgaagatggtgatg 100  Q
    ||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||    
T  7466 gaagataatattgagattcatgttatttggaggtgtatttgagtagctattttgatttttgttcaataaagaagatgatgaaggtatgaagatggtgatg 7367  T
Q  101 atgttcataatcttcct 117  Q
    |||||||||| ||||||    
T  7366 atgttcataaccttcct 7350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0662; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 236 - 281
Target Start/End: Complemental strand, 7177 - 7132
Alignment:
Q  236 caacacaataacactagtgaggtgcttaatctgatggttcaaaaaa 281  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  7177 caacacaataacactagtgaggtgcttaatctgatggttcaaaaaa 7132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 97; Significance: 1e-47; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 39831631 - 39831515
Alignment:
Q  1 gaagaaaatattgagattcatgttatttggaggtgtatttgagtaactattttgttttttgttcaataacgaagatgatgaaggtatgaagatggtgatg 100  Q
    |||||||||||||||||||||||||||||||| ||||||||||||  |||||||||||||||||||||| ||| ||||||||||||||||||||||||||    
T  39831631 gaagaaaatattgagattcatgttatttggagatgtatttgagtagttattttgttttttgttcaataaagaaaatgatgaaggtatgaagatggtgatg 39831532  T
Q  101 atgttcataatcttcct 117  Q
    |||||||||||||||||    
T  39831531 atgttcataatcttcct 39831515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 26 - 119
Target Start/End: Complemental strand, 50359915 - 50359822
Alignment:
Q  26 tttggaggtgtatttgagtaactattttgttttttgttcaataacgaagatgatgaaggtatgaagatggtgatgatgttcataatcttcctgg 119  Q
    |||||||||| ||| ||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  50359915 tttggaggtgaattagagtagctattttgttttttgttcaataaagaagatgatgaaggtatgaacatggtgatgatgttcataatcttcctgg 50359822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 26 - 119
Target Start/End: Complemental strand, 50647061 - 50646968
Alignment:
Q  26 tttggaggtgtatttgagtaactattttgttttttgttcaataacgaagatgatgaaggtatgaagatggtgatgatgttcataatcttcctgg 119  Q
    |||||||||| ||| ||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  50647061 tttggaggtgaattagagtagctattttgttttttgttcaataaagaagatgatgaaggtatgaacatggtgatgatgttcataatcttcctgg 50646968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 26 - 120
Target Start/End: Complemental strand, 22427167 - 22427073
Alignment:
Q  26 tttggaggtgtatttgagtaactattttgttttttgttcaataacgaagatgatgaaggtatgaagatggtgatgatgttcataatcttcctggg 120  Q
    |||||||||| ||| ||||| |||||||||||||||||||||||  ||||||||||| ||||||| |||||||||||||||||||||||||||||    
T  22427167 tttggaggtgaattagagtagctattttgttttttgttcaataaaaaagatgatgaaagtatgaacatggtgatgatgttcataatcttcctggg 22427073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 15071480 - 15071373
Alignment:
Q  1 gaagaaaatattgagattcatgttatttggaggtgtatttgagtaactattttgttttttgttcaataacgaagatgatgaaggtatgaagatggtgatg 100  Q
    ||||| ||| ||||||||||| |||||||||||||||||||||| | |||| | | ||||||| ||  | ||||||||||||| ||||||||||||||||    
T  15071480 gaagataatgttgagattcatattatttggaggtgtatttgagtgattattatttcttttgtttaaggatgaagatgatgaagatatgaagatggtgatg 15071381  T
Q  101 atgttcat 108  Q
    ||||||||    
T  15071380 atgttcat 15071373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 237 - 304
Target Start/End: Complemental strand, 39831400 - 39831333
Alignment:
Q  237 aacacaataacactagtgaggtgcttaatctgatggttcaaaaaagctagtctacggtggtacatatt 304  Q
    |||||||||||||||||||  ||||||||||||| ||||||||||| |||||||||||||||||||||    
T  39831400 aacacaataacactagtgaattgcttaatctgatagttcaaaaaagttagtctacggtggtacatatt 39831333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 236 - 292
Target Start/End: Original strand, 29835674 - 29835730
Alignment:
Q  236 caacacaataacactagtgaggtgcttaatctgatggttcaaaaaagctagtctacg 292  Q
    ||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  29835674 caacaaaataacactagtgaggtgtttaatctgatggttcaaaaaagctagtctacg 29835730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 236 - 304
Target Start/End: Complemental strand, 33213604 - 33213536
Alignment:
Q  236 caacacaataacactagtgaggtgcttaatctgatggttcaaaaaagctagtctacggtggtacatatt 304  Q
    |||||||||||||||||||| ||| |||||||||||||||||||||| || |||||| ||| |||||||    
T  33213604 caacacaataacactagtgatgtgtttaatctgatggttcaaaaaagataatctacgatggaacatatt 33213536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 236 - 304
Target Start/End: Original strand, 12945367 - 12945436
Alignment:
Q  236 caacacaataacactagtgaggtgcttaatctgatggttc-aaaaaagctagtctacggtggtacatatt 304  Q
    |||||| |||||| |||||| ||||||||||||||||||| ||||||| ||||||||||||| |||||||    
T  12945367 caacacgataacattagtgatgtgcttaatctgatggttcaaaaaaagttagtctacggtggaacatatt 12945436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 236 - 274
Target Start/End: Complemental strand, 31654817 - 31654779
Alignment:
Q  236 caacacaataacactagtgaggtgcttaatctgatggtt 274  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  31654817 caacataataacactagtgaggtgcttaatctgatggtt 31654779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 236 - 281
Target Start/End: Original strand, 5234611 - 5234656
Alignment:
Q  236 caacacaataacactagtgaggtgcttaatctgatggttcaaaaaa 281  Q
    ||||||||||| ||||||||||| ||||||| ||||||||||||||    
T  5234611 caacacaataagactagtgaggtacttaatccgatggttcaaaaaa 5234656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 236 - 281
Target Start/End: Original strand, 20107951 - 20107996
Alignment:
Q  236 caacacaataacactagtgaggtgcttaatctgatggttcaaaaaa 281  Q
    ||||||||||| |||||||||||| |||||| ||||||||||||||    
T  20107951 caacacaataagactagtgaggtgtttaatccgatggttcaaaaaa 20107996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 236 - 281
Target Start/End: Complemental strand, 29702587 - 29702542
Alignment:
Q  236 caacacaataacactagtgaggtgcttaatctgatggttcaaaaaa 281  Q
    ||||||||||| |||||||||||| |||||||||| ||||||||||    
T  29702587 caacacaataatactagtgaggtgtttaatctgatagttcaaaaaa 29702542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 240 - 281
Target Start/End: Original strand, 53284152 - 53284193
Alignment:
Q  240 acaataacactagtgaggtgcttaatctgatggttcaaaaaa 281  Q
    |||||||||||||| |||||||||||||||| ||||||||||    
T  53284152 acaataacactagtaaggtgcttaatctgatagttcaaaaaa 53284193  T

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Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 281
Target Start/End: Original strand, 55406267 - 55406312
Alignment:
Q  236 caacacaataacactagtgaggtgcttaatctgatggttcaaaaaa 281  Q
    |||||||||||||||||||||   ||||||||||| ||||||||||    
T  55406267 caacacaataacactagtgagacacttaatctgattgttcaaaaaa 55406312  T

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Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 94
Target Start/End: Original strand, 40558650 - 40558734
Alignment:
Q  7 aatattgagattcatgttatttggaggtgtatttgagtaactattttgttttttgttcaataacgaagatgatgaaggtatgaagatg 94  Q
    ||||| |||||||||  ||||| |||||||||||||||||  |  |||||||| ||||||  | |||||||| |||||||||||||||    
T  40558650 aatatcgagattcattctatttagaggtgtatttgagtaa--acattgtttttggttcaagga-gaagatgacgaaggtatgaagatg 40558734  T

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Target: chr6 (Bit Score: 75; Significance: 2e-34; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 26 - 120
Target Start/End: Original strand, 12945318 - 12945412
Alignment:
Q  26 tttggaggtgtatttgagtaactattttgttttttgttcaataacgaagatgatgaaggtatgaagatggtgatgatgttcataatcttcctggg 120  Q
    |||||||||| ||||||||| |||||||||||| |||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||    
T  12945318 tttggaggtgaatttgagtagctattttgttttctgttcaataaagaagatgatgaaggtatgaacatggtgatgatgttcataatcttcctggg 12945412  T

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Target: chr6; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 236 - 296
Target Start/End: Original strand, 944991 - 945051
Alignment:
Q  236 caacacaataacactagtgaggtgcttaatctgatggttcaaaaaagctagtctacggtgg 296  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  944991 caacacaataacactaatgaggtgcttaatctgatggttcaaaaaagctagtctacggtgg 945051  T

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Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 237 - 281
Target Start/End: Complemental strand, 7124531 - 7124487
Alignment:
Q  237 aacacaataacactagtgaggtgcttaatctgatggttcaaaaaa 281  Q
    ||||||||||||||||||||||||||||| |||||||||||||||    
T  7124531 aacacaataacactagtgaggtgcttaatttgatggttcaaaaaa 7124487  T

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Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 75 - 111
Target Start/End: Complemental strand, 7124751 - 7124715
Alignment:
Q  75 atgatgaaggtatgaagatggtgatgatgttcataat 111  Q
    |||||||||||||||||||||||||||||||||||||    
T  7124751 atgatgaaggtatgaagatggtgatgatgttcataat 7124715  T

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Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 236 - 281
Target Start/End: Original strand, 4181128 - 4181173
Alignment:
Q  236 caacacaataacactagtgaggtgcttaatctgatggttcaaaaaa 281  Q
    ||||||||||| ||||||||||| ||||||| ||||||||||||||    
T  4181128 caacacaataagactagtgaggtacttaatccgatggttcaaaaaa 4181173  T

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Target: scaffold0685 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: scaffold0685
Description:

Target: scaffold0685; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 26 - 119
Target Start/End: Complemental strand, 7062 - 6970
Alignment:
Q  26 tttggaggtgtatttgagtaactattttgttttttgttcaataacgaagatgatgaaggtatgaagatggtgatgatgttcataatcttcctgg 119  Q
    |||||||||| ||| ||||| ||||||||||||||||||||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||    
T  7062 tttggaggtgaattagagtagctattttgttttttgttcaataaagaa-atgatgaaggtatgaacatggtgatgatgttcataatcttcctgg 6970  T

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Target: scaffold0896 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0896
Description:

Target: scaffold0896; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 237 - 281
Target Start/End: Original strand, 1832 - 1876
Alignment:
Q  237 aacacaataacactagtgaggtgcttaatctgatggttcaaaaaa 281  Q
    ||||||||||||||||||||||||||||| |||||||||||||||    
T  1832 aacacaataacactagtgaggtgcttaatttgatggttcaaaaaa 1876  T

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Target: scaffold0285 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0285
Description:

Target: scaffold0285; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 281
Target Start/End: Complemental strand, 17721 - 17685
Alignment:
Q  245 aacactagtgaggtgcttaatctgatggttcaaaaaa 281  Q
    ||||||| |||||||||||||||||||||| ||||||    
T  17721 aacactaatgaggtgcttaatctgatggttaaaaaaa 17685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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