View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19368_low_44 (Length: 318)
Name: NF19368_low_44
Description: NF19368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19368_low_44 |
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Alignment Details
Target: chr8 (Bit Score: 137; Significance: 2e-71; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 16 - 152
Target Start/End: Original strand, 5999497 - 5999633
Alignment:
| Q |
16 |
atggctttcttatcagtgatttaaaccagcttcctgaaccacccatttgagaaaagagcttatttaagaagaatggcaacagcaagaagtagaagttgat |
115 |
Q |
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| T |
5999497 |
atggctttcttatcagtgatttaaaccagcttcctgaaccacccatttgagaaaagagcttatttaagaagaatggcaacagcaagaagtagaagttgat |
5999596 |
T |
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| Q |
116 |
gatgcagtatgtgttatgagtttgaaggtgttcttgt |
152 |
Q |
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| T |
5999597 |
gatgcagtatgtgttatgagtttgaaggtgttcttgt |
5999633 |
T |
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Target: chr8; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 240 - 318
Target Start/End: Original strand, 5999721 - 5999799
Alignment:
| Q |
240 |
cataacggatacgaagacttttccttgcttttgtttcaattttcttatgaatggatgtttccaactcatgttcctgttc |
318 |
Q |
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| T |
5999721 |
cataacggatacgaagacttttccttgcttttgtttcaattttcttatgaatggatgtttccaactcatgttcctgttc |
5999799 |
T |
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