View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19368_low_5 (Length: 595)
Name: NF19368_low_5
Description: NF19368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19368_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 530; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 530; E-Value: 0
Query Start/End: Original strand, 20 - 585
Target Start/End: Original strand, 12624813 - 12625381
Alignment:
| Q |
20 |
ccttattcttagatgatgagaaagaggcgtcgacattacatttaaatctacctggggatgcttttttccatcgatggctgatatcattactcggttcagg |
119 |
Q |
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| T |
12624813 |
ccttattcttagatgatgagaaagaggcgtcgacattacatttaaatctacctggggatgcttttttccaacgatggctgatatcattactcggttcagg |
12624912 |
T |
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| Q |
120 |
ctgttgatgcacatctacgtgtctgaacttgtttgcattccttcagccattttccaatcctcaagtaaatccatggcatgcgctccaacacctgggcatt |
219 |
Q |
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| T |
12624913 |
ctgttgatgcacatctacgtgtctgaacttgtctgcattccttcagccattttccaatcctcaagtaaatccatggcgtgcgctccaacacctgggcatt |
12625012 |
T |
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| Q |
220 |
gtctcgtccacttgctgccataatttcatattccttcttttccataaacttcaaaggatggctgcgaaatgcgcacattgagaggcatggaggcact--a |
317 |
Q |
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| T |
12625013 |
gtctcgtccacttgctgccataatttcatattccttcttttccataaacttcaaaggatggctgcgaaatgcgcacattgagaggcatggaggcactaca |
12625112 |
T |
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| Q |
318 |
cagcaagagaaaaaccgcaacttccatgttataattcggacttaatgcttgctctatatcaacaataaaatcgcttcgcctaacctcaactgtgacctct |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12625113 |
cagcaagagaaaaaccgcaacttccatgttataattcggacttaatgcttgctctatatcaacaataaaatcgcttcgcctaacctcaactgtgacctct |
12625212 |
T |
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| Q |
418 |
ctccatggtagttgccgctccaccttgctattcagtcgacaaccaccgttaataggtcact-aacaaccttcctaccatcatcttggacaagtcaagtca |
516 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
12625213 |
ctccatggtagttgccgctccaccttgctattcagtcgacaaccaccgttaataggtcactgaacaaccttcctaccatcatcttggacaagtcaagtca |
12625312 |
T |
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| Q |
517 |
cctcacacggatctaaaactaattatgttgttcttctatgatgtcaagaagactcgtctctcccctttg |
585 |
Q |
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|||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12625313 |
cctcgcacggatctgaaactaattatgttgttcttctatgatgtcaagaagactcgtctctcccctttg |
12625381 |
T |
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