View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19368_low_50 (Length: 295)
Name: NF19368_low_50
Description: NF19368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19368_low_50 |
 | |
|
| [»] chr8 (4 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 119; Significance: 8e-61; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 165 - 295
Target Start/End: Original strand, 30885638 - 30885768
Alignment:
| Q |
165 |
tgtgatacataaccggtaacgatttgtggggtctcaaatcctggaggtggtggtaccaacaaggtagtctagtgttggttgtgatggatatggtagtaaa |
264 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
30885638 |
tgtgatacataaccggtagcgatttgtggggtctcaaatcctggaggtggtggtaccaacaaggtagtctggtgttggttgtgatggatatggtagtaaa |
30885737 |
T |
|
| Q |
265 |
gattacggttggtagaaacaggaccaaaatc |
295 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
30885738 |
aattacggttggtagaaacaggaccaaaatc |
30885768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 175 - 294
Target Start/End: Original strand, 30879653 - 30879772
Alignment:
| Q |
175 |
aaccggtaacgatttgtggggtctcaaatcctggaggtggtggtaccaacaaggtagtctagtgttggttgtgatggatatggtagtaaagattacggtt |
274 |
Q |
| |
|
|||||||| | ||||| ||||||||||||||||||||||||||||| ||||||||||| | ||| |||| | ||||||| |||| || ||||||| |||| |
|
|
| T |
30879653 |
aaccggtagcaatttgaggggtctcaaatcctggaggtggtggtacaaacaaggtagtttggtgctggtggggatggatttggtggtgaagattagggtt |
30879752 |
T |
|
| Q |
275 |
ggtagaaacaggaccaaaat |
294 |
Q |
| |
|
||||||||| ||| |||||| |
|
|
| T |
30879753 |
ggtagaaacgggagcaaaat |
30879772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 30885597 - 30885640
Alignment:
| Q |
18 |
aatcatgccataaaaatttaatttgatttaaatttaaaagatgt |
61 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30885597 |
aatcatgccataaaaatttaatttgatttaaatttaaaagatgt |
30885640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 121
Target Start/End: Original strand, 30879490 - 30879585
Alignment:
| Q |
29 |
aaaaatttaatttgatttaaatttaaaagatgtaatt--tcatgctctaattgact--atggaacccctaagcctaactccatttgagaatttggat |
121 |
Q |
| |
|
||||| |||||| ||||||| |||||||||||||||| ||||||||||||||||| | | |||||| |||||| ||||||||||||||| |||| |
|
|
| T |
30879490 |
aaaaaattaattagatttaagtttaaaagatgtaattactcatgctctaattgactccaagaaacccc-gagcctagctccatttgagaattgggat |
30879585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University