View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19368_low_51 (Length: 294)

Name: NF19368_low_51
Description: NF19368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19368_low_51
NF19368_low_51
[»] chr4 (15 HSPs)
chr4 (17-282)||(46015297-46015554)
chr4 (98-261)||(46020606-46020767)
chr4 (98-202)||(46246223-46246327)
chr4 (98-202)||(46015920-46016025)
chr4 (114-214)||(46021293-46021393)
chr4 (98-213)||(46303766-46303881)
chr4 (98-174)||(46428282-46428359)
chr4 (111-196)||(41074452-41074537)
chr4 (98-202)||(46027965-46028069)
chr4 (150-202)||(46020871-46020923)
chr4 (124-193)||(14320607-14320676)
chr4 (124-193)||(14321775-14321844)
chr4 (159-202)||(41074984-41075027)
chr4 (159-188)||(46307281-46307310)
chr4 (166-202)||(46304203-46304239)
[»] chr1 (4 HSPs)
chr1 (111-202)||(3802619-3802710)
chr1 (96-202)||(3802180-3802286)
chr1 (102-214)||(50668519-50668631)
chr1 (96-214)||(50668050-50668169)
[»] chr8 (2 HSPs)
chr8 (98-202)||(4522907-4523011)
chr8 (98-202)||(4525280-4525382)
[»] scaffold0079 (2 HSPs)
scaffold0079 (164-214)||(6701-6751)
scaffold0079 (100-185)||(7933-8018)
[»] scaffold0384 (2 HSPs)
scaffold0384 (100-185)||(5721-5806)
scaffold0384 (164-214)||(4140-4190)


Alignment Details
Target: chr4 (Bit Score: 182; Significance: 2e-98; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 17 - 282
Target Start/End: Original strand, 46015297 - 46015554
Alignment:
Q  17 cagtcgaatcacgcaagttcaaatgggtaactcaaataacctattttatatattggttaacatgca-atcatccatctgttatgttatgatgtacatttt 115  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||  |||||||||     ||||||||||||||||||    
T  46015297 cagtcgaatcacgcaagttcaaatgggtaactcaaataatctattttatatattggttaacatgcacttcatccatc-----tgttatgatgtacatttt 46015391  T
Q  116 gagtttaaaaccatgcgaagataaaattcttgttgttttcctgttttatgaaaatgcaacctcttgattgagtgttaatatgcacatgatttggttatgn 215  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  46015392 gagtttaaaaccatgtgaagataaaattcttgttgttttcctgttttatgaaaatgcaacctcttgattgagtgttaatatgcacatgatttggttatgt 46015491  T
Q  216 nnnnnnnatcttgattgattcagtccatttcattctctattattatatccattgccgttcttctatt 282  Q
           |||    ||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  46015492 tttttttatc----ttgattcagtccatttcattctctattattatatccaatgccgttcttctatt 46015554  T

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Target: chr4; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 98 - 261
Target Start/End: Original strand, 46020606 - 46020767
Alignment:
Q  98 tgttatgatgtacattttgagtttaaaaccatgcgaagataaaattcttgttgttttcctgttttatgaaaatgcaacctcttgattgagtgttaatatg 197  Q
    ||||||||| ||| || |||||||||||||||| ||||||| ||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||    
T  46020606 tgttatgatttaccttatgagtttaaaaccatgtgaagatacaattctttttgttttccttttttatgaaaatgcaacctcttgattgagtgttaatatg 46020705  T
Q  198 cacatgatttggttatgnnnnnnnnatcttgattgattcagtccatttcattctctattattat 261  Q
    ||||| |||||||||||        |||||||||||||||||||||||||||||||||||||||    
T  46020706 cacataatttggttatg--tttattatcttgattgattcagtccatttcattctctattattat 46020767  T

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Target: chr4; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 98 - 202
Target Start/End: Complemental strand, 46246327 - 46246223
Alignment:
Q  98 tgttatgatgtacattttgagtttaaaaccatgcgaagataaaattcttgttgttttcctgttttatgaaaatgcaacctcttgattgagtgttaatatg 197  Q
    ||||||||| ||| || | ||||||||||| || ||||||| ||||||| || ||||||| |||||||||||||||||||||||||||| ||||||||||    
T  46246327 tgttatgatttaccttataagtttaaaaccttgtgaagatacaattcttttttttttccttttttatgaaaatgcaacctcttgattgaatgttaatatg 46246228  T
Q  198 cacat 202  Q
    |||||    
T  46246227 cacat 46246223  T

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Target: chr4; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 98 - 202
Target Start/End: Original strand, 46015920 - 46016025
Alignment:
Q  98 tgttatgatgtacattttgagtttaaaaccatgcgaagataaaattcttgttgttttcctgtttt-atgaaaatgcaacctcttgattgagtgttaatat 196  Q
    ||||||||| ||||| |||| |||||||| ||| ||| ||| |||| || ||| ||||||||||| ||||||||||||  ||||||||||||||||||||    
T  46015920 tgttatgatttacatcttgactttaaaactatgtgaacatacaattatttttgctttcctgtttttatgaaaatgcaagttcttgattgagtgttaatat 46016019  T
Q  197 gcacat 202  Q
     |||||    
T  46016020 acacat 46016025  T

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Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 114 - 214
Target Start/End: Original strand, 46021293 - 46021393
Alignment:
Q  114 ttgagtttaaaaccatgcgaagataaaattcttgttgttttcctgttttatgaaaatgcaacctcttgattgagtgttaatatgcacatgatttggttat 213  Q
    |||| ||||||| |||  ||||| | |||||||  || |||||||||||||  |||||||||||||||||||| ||||||||||||||| | ||||||||    
T  46021293 ttgactttaaaatcatttgaagacacaattctttctgctttcctgttttatagaaatgcaacctcttgattgaatgttaatatgcacataagttggttat 46021392  T
Q  214 g 214  Q
    |    
T  46021393 g 46021393  T

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Target: chr4; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 98 - 213
Target Start/End: Complemental strand, 46303881 - 46303766
Alignment:
Q  98 tgttatgatgtacattttgagtttaaaaccatgcgaagataaaattcttgttgttttcctgttttatgaaaatgcaacctcttgattgagtgttaatatg 197  Q
    ||||||||| || ||||||| |||||||| ||| ||||| | |||||||  || |||||| |||||| | ||||||| |||||||||  |||||||||||    
T  46303881 tgttatgatttagattttgactttaaaactatgtgaagacacaattctttatgctttcctattttattacaatgcaagctcttgattttgtgttaatatg 46303782  T
Q  198 cacatgatttggttat 213  Q
    ||||| | ||||||||    
T  46303781 cacataagttggttat 46303766  T

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Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 98 - 174
Target Start/End: Original strand, 46428282 - 46428359
Alignment:
Q  98 tgttatgatgtacattttgagtttaaaaccatgcgaagataaaattcttgttgttttcctg-ttttatgaaaatgcaa 174  Q
    ||||||||| |||||||||| |||||||| ||||||||||| |||| || ||| ||||||| ||||||||||||||||    
T  46428282 tgttatgatttacattttgactttaaaactatgcgaagatacaattatttttgctttcctgtttttatgaaaatgcaa 46428359  T

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Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 111 - 196
Target Start/End: Original strand, 41074452 - 41074537
Alignment:
Q  111 attttgagtttaaaaccatgcgaagataaaattcttgttgttttcctgttttatgaaaatgcaacctcttgattgagtgttaatat 196  Q
    ||||||| |||||||||||| ||||||| ||||||| ||| |||  ||||||| |||||||| |  |||||||| |||||||||||    
T  41074452 attttgactttaaaaccatgtgaagatacaattctttttgctttaatgttttaagaaaatgctaggtcttgatttagtgttaatat 41074537  T

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Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 98 - 202
Target Start/End: Original strand, 46027965 - 46028069
Alignment:
Q  98 tgttatgatgtacattttgagtttaaaaccatgcgaagataaaattcttgttgttttcctgtttt-atgaaaatgcaacctcttgattgagtgttaatat 196  Q
    ||||||||| || ||||||| |||||| | ||| ||||||| |||| || ||| ||||||||||| ||||| ||||||  ||||| ||||||||||||||    
T  46027965 tgttatgatttaaattttgactttaaa-ctatgtgaagatacaattatttttgctttcctgtttttatgaagatgcaagttcttgtttgagtgttaatat 46028063  T
Q  197 gcacat 202  Q
    ||||||    
T  46028064 gcacat 46028069  T

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Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 150 - 202
Target Start/End: Original strand, 46020871 - 46020923
Alignment:
Q  150 gttttcctgttttatgaaaatgcaacctcttgattgagtgttaatatgcacat 202  Q
    ||||||||||||||||||||| |||  ||||||||||||||||| ||||||||    
T  46020871 gttttcctgttttatgaaaatccaagttcttgattgagtgttaaaatgcacat 46020923  T

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Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 124 - 193
Target Start/End: Original strand, 14320607 - 14320676
Alignment:
Q  124 aaccatgcgaagataaaattcttgttgttttcctgttttatgaaaatgcaacctcttgattgagtgttaa 193  Q
    ||||||| ||||||| ||||| | ||| ||||||||||||||| ||||||| ||| ||||||| ||||||    
T  14320607 aaccatgtgaagatacaattcattttgctttcctgttttatgagaatgcaatctcatgattgattgttaa 14320676  T

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Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 124 - 193
Target Start/End: Original strand, 14321775 - 14321844
Alignment:
Q  124 aaccatgcgaagataaaattcttgttgttttcctgttttatgaaaatgcaacctcttgattgagtgttaa 193  Q
    ||||||| ||||||| ||||| | ||| |||||||||| |||||||||||| ||| ||||||| ||||||    
T  14321775 aaccatgggaagatacaattcattttgctttcctgtttcatgaaaatgcaatctcatgattgattgttaa 14321844  T

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Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 159 - 202
Target Start/End: Original strand, 41074984 - 41075027
Alignment:
Q  159 ttttatgaaaatgcaacctcttgattgagtgttaatatgcacat 202  Q
    |||| ||||||||| | |||||||||||||||||||||||||||    
T  41074984 ttttgtgaaaatgctagctcttgattgagtgttaatatgcacat 41075027  T

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Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 188
Target Start/End: Complemental strand, 46307310 - 46307281
Alignment:
Q  159 ttttatgaaaatgcaacctcttgattgagt 188  Q
    ||||||||||||||||||||||||||||||    
T  46307310 ttttatgaaaatgcaacctcttgattgagt 46307281  T

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Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 166 - 202
Target Start/End: Complemental strand, 46304239 - 46304203
Alignment:
Q  166 aaaatgcaacctcttgattgagtgttaatatgcacat 202  Q
    ||||||||| |||||| ||||||||||||||||||||    
T  46304239 aaaatgcaagctcttgtttgagtgttaatatgcacat 46304203  T

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Target: chr1 (Bit Score: 64; Significance: 5e-28; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 111 - 202
Target Start/End: Complemental strand, 3802710 - 3802619
Alignment:
Q  111 attttgagtttaaaaccatgcgaagataaaattcttgttgttttcctgttttatgaaaatgcaacctcttgattgagtgttaatatgcacat 202  Q
    ||||||| ||||||| |||| ||||||| ||||| | |||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  3802710 attttgactttaaaatcatgtgaagatacaattcgttttgttttcctattttatgaaaatgcaacctcttgattgagtgttaatatgcacat 3802619  T

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Target: chr1; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 96 - 202
Target Start/End: Complemental strand, 3802286 - 3802180
Alignment:
Q  96 tatgttatgatgtacattttgagtttaaaaccatgcgaagataaaattcttgttgttttcctgttttatgaaaatgcaacctcttgattgagtgttaata 195  Q
    ||||||||||| || |||| || |||||||||||| |||| || ||||  | ||| |||||| |||||||||||| |||||||||| |||||||||||||    
T  3802286 tatgttatgatttagatttcgactttaaaaccatgtgaagctacaattagttttgctttcctattttatgaaaatacaacctcttgtttgagtgttaata 3802187  T
Q  196 tgcacat 202  Q
    |||||||    
T  3802186 tgcacat 3802180  T

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Target: chr1; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 102 - 214
Target Start/End: Original strand, 50668519 - 50668631
Alignment:
Q  102 atgatgtacattttgagtttaaaaccatgcgaagataaaattcttgttgttttcctgttttatgaaaatgcaacctcttgattgagtgttaatatgcaca 201  Q
    ||||| || ||||||| |||| || |||| ||| ||| ||||||| ||| ||| ||| ||||||||||||||| |||||||| |||||||||||||||||    
T  50668519 atgatttagattttgactttagaagcatgtgaaaatagaattctttttgctttactgctttatgaaaatgcaagctcttgatcgagtgttaatatgcaca 50668618  T
Q  202 tgatttggttatg 214  Q
    | | |||||||||    
T  50668619 taagttggttatg 50668631  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 96 - 214
Target Start/End: Original strand, 50668050 - 50668169
Alignment:
Q  96 tatgttatgatgtacattttgagtttaaaaccatgcgaagataaaattcttgttgttttc-ctgttttatgaaaatgcaacctcttgattgagtgttaat 194  Q
    ||||| ||||| || ||||||| |||| ||||||| ||||||| |||| || ||   ||| ||| ||||||||||||||| ||||| ||||| |||||||    
T  50668050 tatgtcatgatttaaattttgactttagaaccatgtgaagatacaatttttttttgcttcactgctttatgaaaatgcaagctcttaattgaatgttaat 50668149  T
Q  195 atgcacatgatttggttatg 214  Q
    |||||| | | |||||||||    
T  50668150 atgcacgtaagttggttatg 50668169  T

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Target: chr8 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 98 - 202
Target Start/End: Complemental strand, 4523011 - 4522907
Alignment:
Q  98 tgttatgatgtacattttgagtttaaaaccatgcgaagataaaattcttgttgttttcctgttttatgaaaatgcaacctcttgattgagtgttaatatg 197  Q
    ||||||||| || ||||||| |||||||||||| ||||| | ||||||| ||| ||||||||||||||||||| ||| |||||||||||||||||| |||    
T  4523011 tgttatgatttagattttgactttaaaaccatgtgaagacacaattctttttgctttcctgttttatgaaaattcaagctcttgattgagtgttaaaatg 4522912  T
Q  198 cacat 202  Q
    |||||    
T  4522911 cacat 4522907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 98 - 202
Target Start/End: Complemental strand, 4525382 - 4525280
Alignment:
Q  98 tgttatgatgtacattttgagtttaaaaccatgcgaagataaaattcttgttgttttcctgttttatgaaaatgcaacctcttgattgagtgttaatatg 197  Q
    ||||||||| ||  |||||| |||||||||||| ||||| ||  ||||| ||| |||| |||||||||||||  ||| ||||||||||||||||||||||    
T  4525382 tgttatgatctaggttttgactttaaaaccatgtgaagacaa--ttctttttgctttcttgttttatgaaaaatcaagctcttgattgagtgttaatatg 4525285  T
Q  198 cacat 202  Q
    |||||    
T  4525284 cacat 4525280  T

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Target: scaffold0079 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 214
Target Start/End: Complemental strand, 6751 - 6701
Alignment:
Q  164 tgaaaatgcaacctcttgattgagtgttaatatgcacatgatttggttatg 214  Q
    ||||||||| | ||||||||||||||||||||||||||| | |||||||||    
T  6751 tgaaaatgctagctcttgattgagtgttaatatgcacataagttggttatg 6701  T

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Target: scaffold0079; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 185
Target Start/End: Complemental strand, 8018 - 7933
Alignment:
Q  100 ttatgatgtacattttgagtttaaaaccatgcgaagataaaattcttgttgttttcctgttttatgaaaatgcaacctcttgattg 185  Q
    ||||||| ||||| |||| |||| |||  || | ||||| ||||||| |||||||| ||||||||||||||| || ||||| ||||    
T  8018 ttatgatttacatgttgactttagaactttgtgtagatacaattctttttgttttcttgttttatgaaaatgaaaactctttattg 7933  T

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Target: scaffold0384 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: scaffold0384
Description:

Target: scaffold0384; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 100 - 185
Target Start/End: Complemental strand, 5806 - 5721
Alignment:
Q  100 ttatgatgtacattttgagtttaaaaccatgcgaagataaaattcttgttgttttcctgttttatgaaaatgcaacctcttgattg 185  Q
    ||||||| ||||| |||| |||| |||  || | ||||| ||||||| |||||||| ||||||||||||||| || ||||||||||    
T  5806 ttatgatttacatgttgactttagaactttgtgtagatacaattctttttgttttcttgttttatgaaaatgaaaactcttgattg 5721  T

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Target: scaffold0384; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 214
Target Start/End: Complemental strand, 4190 - 4140
Alignment:
Q  164 tgaaaatgcaacctcttgattgagtgttaatatgcacatgatttggttatg 214  Q
    ||||||||| | |||| |||||||||||||||||||||| | |||||||||    
T  4190 tgaaaatgctagctctagattgagtgttaatatgcacataagttggttatg 4140  T

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