View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19368_low_53 (Length: 282)
Name: NF19368_low_53
Description: NF19368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19368_low_53 |
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| [»] scaffold0016 (2 HSPs) |
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| [»] scaffold0060 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 257; Significance: 1e-143; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 277
Target Start/End: Original strand, 33688857 - 33689133
Alignment:
| Q |
1 |
tataagtgactctttcttcatctcaatgttttgattgattcataatatgataaagtagttgatacttgatgtatgtaaggtacgtaaccaacgtgtaact |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33688857 |
tataagtgactctttcttcatctcaatgttttgattgattcataatatgataaagtagttgatacttgatgtatgtaaggtacgtaaccaacgtgtaact |
33688956 |
T |
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| Q |
101 |
tacatgtacaattacttaacaaactcattactttgaaccataagttttgcttctgacattgctgatattttaatctttttaattcttatagttaattttg |
200 |
Q |
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||||| ||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33688957 |
tacatatacaattacttaacaaactcaatactttgaaccataagttttgcttttgacattgctgatattttaatctttttaattcttatagttaattttg |
33689056 |
T |
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| Q |
201 |
agatatactttttcattagctaatagtttttcaacacatggcatgcaaattatatggagattaatcagaattatcta |
277 |
Q |
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| T |
33689057 |
agatatacttttgcattagctaatagtttttcaacacatggcatgcaaattatatggagattaatcataattatcta |
33689133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 85 - 267
Target Start/End: Original strand, 33697432 - 33697613
Alignment:
| Q |
85 |
taaccaacgtgtaacttacatgtacaattacttaacaaactcattactttgaaccataagttttgcttctgac-attgctgatatttt-aatctttttaa |
182 |
Q |
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| T |
33697432 |
taaccaacgtgtaacttacttatacaattaccttacaaactcatcactttgaaccataagttttgcttttagctattgctgatatttttaacctttttaa |
33697531 |
T |
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| Q |
183 |
ttcttatagttaattttgagatatactttttcattagctaatagtttttcaacacatggcatgcaaattatatggagattaatca |
267 |
Q |
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| T |
33697532 |
ttgat---ggtaattttgagatatacttttgcaatagctaatcatttttcaacacatggcatgcaaattatatggacattaatca |
33697613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 82 - 187
Target Start/End: Original strand, 33676540 - 33676647
Alignment:
| Q |
82 |
acgtaaccaacgtgtaacttacatgtacaattacttaacaaactcattactttgaaccataagttttgcttct-gacattgctgata-ttttaatctttt |
179 |
Q |
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|||||||||||||||||| ||||| |||||||||||||||||||||| ||||||||| ||||||||||||| | | ||||| ||||| |||||| ||||| |
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| T |
33676540 |
acgtaaccaacgtgtaacgtacatatacaattacttaacaaactcatcactttgaactataagttttgcttttagccattgttgatatttttaacctttt |
33676639 |
T |
|
| Q |
180 |
taattctt |
187 |
Q |
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|||||||| |
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| T |
33676640 |
taattctt |
33676647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 82 - 138
Target Start/End: Original strand, 33667956 - 33668012
Alignment:
| Q |
82 |
acgtaaccaacgtgtaacttacatgtacaattacttaacaaactcattactttgaac |
138 |
Q |
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| T |
33667956 |
acgtaaccaacgtgtaacgtacatatacaattacttaacaaactcatcactttgaac |
33668012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 69; Significance: 5e-31; HSPs: 2)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 129 - 267
Target Start/End: Complemental strand, 83437 - 83297
Alignment:
| Q |
129 |
tactttgaaccataagttttgcttctgac-attgctgatatttt-aatctttttaattcttatagttaattttgagatatactttttcattagctaatag |
226 |
Q |
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|||||||||||||||||||||||| | | ||| ||||||||| || |||||||||||||| ||||| ||||||||||||||||| ||||||||||| |
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| T |
83437 |
tactttgaaccataagttttgcttttagctatttatgatatttttaacctttttaattcttagagttatttttgagatatacttttgcattagctaatca |
83338 |
T |
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| Q |
227 |
tttttcaacacatggcatgcaaattatatggagattaatca |
267 |
Q |
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|||||||||||||||| ||||||||||||| | |||||||| |
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| T |
83337 |
tttttcaacacatggcttgcaaattatatgaacattaatca |
83297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 101 - 201
Target Start/End: Complemental strand, 92574 - 92474
Alignment:
| Q |
101 |
tacatgtacaattacttaacaaactcattactttgaaccataagttttgcttct-gacattgctgatattttaatctttttaattcttatagttaatttt |
199 |
Q |
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|||||||||||||||||||| ||||||| | ||||||||||| ||||||||| | | |||| |||||||||| ||||||||||||| |||| ||||| |
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| T |
92574 |
tacatgtacaattacttaacgaactcatca-tttgaaccataggttttgcttttagccattagagatattttaacctttttaattcttggagttgatttt |
92476 |
T |
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| Q |
200 |
ga |
201 |
Q |
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|| |
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| T |
92475 |
ga |
92474 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0060 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0060
Description:
Target: scaffold0060; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 84 - 139
Target Start/End: Complemental strand, 33096 - 33041
Alignment:
| Q |
84 |
gtaaccaacgtgtaacttacatgtacaattacttaacaaactcattactttgaacc |
139 |
Q |
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||||||||||| |||||||||| |||||||||||||||| ||||| |||||||||| |
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| T |
33096 |
gtaaccaacgtttaacttacatatacaattacttaacaatctcatcactttgaacc |
33041 |
T |
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