View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19368_low_54 (Length: 277)
Name: NF19368_low_54
Description: NF19368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19368_low_54 |
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Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 18 - 257
Target Start/End: Original strand, 22776751 - 22776990
Alignment:
| Q |
18 |
acttaaatctactagtgtcccccgaaatttgaatatctggtaaatcttcatcatcacgtgtcttcactctttgatccatccacaccacccctcttgtttc |
117 |
Q |
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| T |
22776751 |
acttaaatctactagtgtcccccgaaatttgaatatctggtaaatcttcatcatcacgtgtcttcactctttgatccatccacaccacccctcttgtttc |
22776850 |
T |
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| Q |
118 |
attaggtttccaccataccttaatgtattcctttcttatgttccacaaatttgatgaagccgctatcccaaaaacaatgtgtttgatttctgtgtcttgt |
217 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
22776851 |
attatgtttccaccataccttaatgtattcctttcttatgttccacaaatttgatgaagccgctatcccaaaaacaatgtgtttgatctctgtgtcttgt |
22776950 |
T |
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| Q |
218 |
ctttgagataaatcatcaatagacaattcttcttcatctt |
257 |
Q |
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| T |
22776951 |
ctttgagataaatcatcaatagacaattcttcttcatctt |
22776990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 81 - 224
Target Start/End: Original strand, 40945428 - 40945571
Alignment:
| Q |
81 |
tcactctttgatccatccacaccacccctcttgtttcattaggtttccaccataccttaatgtattcctttcttatgttccacaaatttgatgaagccgc |
180 |
Q |
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| T |
40945428 |
tcactctttgatctaaccaaacaacacctcttgtttgttttggtctccaccatattttgatgtattcttttcttgtattccataaatttgatgaagcagc |
40945527 |
T |
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| Q |
181 |
tatcccaaaaacaatgtgtttgatttctgtgtcttgtctttgag |
224 |
Q |
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| T |
40945528 |
tatcccaaaaacaatgtgtttcagctcagtatcttgtctttgag |
40945571 |
T |
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