View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19368_low_55 (Length: 266)
Name: NF19368_low_55
Description: NF19368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19368_low_55 |
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Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 16 - 250
Target Start/End: Original strand, 53045807 - 53046040
Alignment:
| Q |
16 |
atgaagtttattccatctatggtannnnnnnncttcttaaattgatattttcaatttgttgagagattatttctgctcatttctcatgtccttactgatg |
115 |
Q |
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| T |
53045807 |
atgaagtttattccatctatggtatttttttt-ttcttaaattgatattttcaatttgttgagagattatttctgctcatttctcatgtccttactgatg |
53045905 |
T |
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| Q |
116 |
ttatccatgtgtaattgattgaaggctcgtatttatgaaggcagtgaaacaattcaattttattccatcctccaaagcttgattgtttttaaggtttgtt |
215 |
Q |
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| T |
53045906 |
ttatccatgtgtaattgattgaaggctcgtatttatgaaggcagtgaaacaattcaattttattccatcctccaaagcttgattgtttttaaggtttgtt |
53046005 |
T |
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| Q |
216 |
ggattttgattggtgtaactagaaaaagctatttt |
250 |
Q |
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| T |
53046006 |
ggattttgattggtgtaactagaaaaagctatttt |
53046040 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 109 - 210
Target Start/End: Complemental strand, 15961258 - 15961157
Alignment:
| Q |
109 |
actgatgttatccatgtgtaattgattgaaggctcgtatttatgaaggcagtgaaacaattcaattttattccatcctccaaagcttgattgtttttaag |
208 |
Q |
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|||||| |||| ||| | ||||||| || |||||||||| |||||||| | |||| |||||||||| |||| ||||| |||| ||| || ||||||||| |
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| T |
15961258 |
actgatattatgcatttttaattgactgtaggctcgtatatatgaaggaaatgaaccaattcaattccattctatcctacaaaccttcatagtttttaag |
15961159 |
T |
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| Q |
209 |
gt |
210 |
Q |
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|| |
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| T |
15961158 |
gt |
15961157 |
T |
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