View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19368_low_6 (Length: 590)
Name: NF19368_low_6
Description: NF19368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19368_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 4 - 373
Target Start/End: Original strand, 41391861 - 41392219
Alignment:
| Q |
4 |
atgaaacagaatagataaataaacatagtgaaaggattaatacaaactattttaggtgtaaggattgctctatcttggaagaattccttttcatgcatgt |
103 |
Q |
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| T |
41391861 |
atgaaatagaacagataaataaacagagtgaaaggattaatacaaactgttttaggtgtaaggattgctctatcttaaaagaattccttttcatgcatgt |
41391960 |
T |
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| Q |
104 |
tatccaacaatggaaaagtggctgaatgaattctactcaactatccaa----acattggaaaacaacaaatgataggttggagagatgcgtgcatgagtt |
199 |
Q |
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| T |
41391961 |
tatccaacaatggaaaagtggctgaattaattctactcaactatccaattaaacattggaaaacaacaaatgataggttggagatatggttgcatgagtt |
41392060 |
T |
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| Q |
200 |
aaatgagaatgcttacatccaaccaaaagtaagatatggctgcatacattaaatcctatgtggcacatgctatttagcaaaggggacaacatgtgattta |
299 |
Q |
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| T |
41392061 |
aaatgagaatgcttacatccaaccaaaagtaagatatggctgcatacattaaaccctatgtagcacaggctatttagcaaaggggacaaagtgtgattta |
41392160 |
T |
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| Q |
300 |
tacaattaatgttgtcttgcctagtggcgttcccttatgccttgaaagtgtaatattaacttatatgctataat |
373 |
Q |
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| T |
41392161 |
tacagttaa---------------tggtgttcccctatgccttgaaagtgtaatattaactaatatgctataat |
41392219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 366 - 516
Target Start/End: Original strand, 41392834 - 41392985
Alignment:
| Q |
366 |
gctataatatatgtgcatgcagatagtatttt-gcgcgaatcaatttacagtagggaagtgagactactaataattaattgtagctattcagccaactgt |
464 |
Q |
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| T |
41392834 |
gctataatatatgtgcatgcagatagtatttttgcgcgaatcaatttatagtagggaagtgagactactaataattaattgaagctattcagccaactgt |
41392933 |
T |
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| Q |
465 |
aactgaattcaatcatccaaagccaggcgacaaaacgtgagaaaaacattaa |
516 |
Q |
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| T |
41392934 |
aactgaacttaatcatccaaagcgaggggacaaaacgtgagaaaaacattaa |
41392985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 53 - 115
Target Start/End: Original strand, 43027129 - 43027191
Alignment:
| Q |
53 |
ttttaggtgtaaggattgctctatcttggaagaattccttttcatgcatgttatccaacaatg |
115 |
Q |
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| T |
43027129 |
ttttaggtgtaagtattgctctatcttggaagaattccttttcatgcatgttatccaacaatg |
43027191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 3e-22; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 53 - 115
Target Start/End: Complemental strand, 925216 - 925154
Alignment:
| Q |
53 |
ttttaggtgtaaggattgctctatcttggaagaattccttttcatgcatgttatccaacaatg |
115 |
Q |
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| T |
925216 |
ttttaggtgtaagtattgctctatcttggaagaaatccttttcatgcatgttatccaacaatg |
925154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 53 - 113
Target Start/End: Original strand, 44703636 - 44703696
Alignment:
| Q |
53 |
ttttaggtgtaaggattgctctatcttggaagaattccttttcatgcatgttatccaacaa |
113 |
Q |
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| T |
44703636 |
ttttaggtgtaagtattgctctatcttggaagaattcattttcatgcatgttatccaacaa |
44703696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 4e-21; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 53 - 113
Target Start/End: Complemental strand, 5453705 - 5453645
Alignment:
| Q |
53 |
ttttaggtgtaaggattgctctatcttggaagaattccttttcatgcatgttatccaacaa |
113 |
Q |
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| T |
5453705 |
ttttaggtgtaagtattgctctatcttggaagaattcgttttcatgcatgttatccaacaa |
5453645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 213 - 295
Target Start/End: Complemental strand, 5452874 - 5452792
Alignment:
| Q |
213 |
tacatccaaccaaaagtaagatatggctgcatacattaaatcctatgtggcacatgctatttagcaaaggggacaacatgtga |
295 |
Q |
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| T |
5452874 |
tacatccaacaaagagtaagatatggctgcatacattaaacccaatgtggcagaggcaattcagctaaggggacaaaatgtga |
5452792 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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