View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19368_low_62 (Length: 238)

Name: NF19368_low_62
Description: NF19368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19368_low_62
NF19368_low_62
[»] chr5 (13 HSPs)
chr5 (22-206)||(37437028-37437212)
chr5 (22-206)||(37534433-37534617)
chr5 (22-206)||(37712951-37713135)
chr5 (22-206)||(37595657-37595841)
chr5 (22-206)||(37825222-37825406)
chr5 (22-206)||(37641205-37641389)
chr5 (22-218)||(37399470-37399666)
chr5 (22-219)||(37391604-37391801)
chr5 (22-206)||(37703995-37704179)
chr5 (29-216)||(37380985-37381172)
chr5 (22-217)||(37430073-37430268)
chr5 (23-206)||(37698120-37698303)
chr5 (30-206)||(37411966-37412141)
[»] chr3 (1 HSPs)
chr3 (22-218)||(14554347-14554543)
[»] chr4 (2 HSPs)
chr4 (29-218)||(16841526-16841715)
chr4 (47-206)||(24216411-24216570)


Alignment Details
Target: chr5 (Bit Score: 133; Significance: 3e-69; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 22 - 206
Target Start/End: Complemental strand, 37437212 - 37437028
Alignment:
Q  22 agacaggatcttggaaaaacagtatagattgttgcgagtgggatggtatcacgtgcaacaccatatcagatcacgtgatcggtttggaccttagttgcaa 121  Q
    |||||| ||||||| ||||||||| ||||||||| |||||||||||| |||||||| ||||||| |||||||||||||| ||| ||||||| ||||||||    
T  37437212 agacagaatcttgggaaaacagtacagattgttgtgagtgggatggtgtcacgtgcgacaccatgtcagatcacgtgattggtctggacctcagttgcaa 37437113  T
Q  122 ctatctgaaaggtgaattacatctcaatagcaccatctttcagcttaaataccttcaacaactcaacttggcttttaatcatttt 206  Q
    | ||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  37437112 caatctgaaaggtgaattacatcccaatagcaccatctttcagcttaaacaccttcaacaactcaacttggcttttaatcatttt 37437028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 22 - 206
Target Start/End: Complemental strand, 37534617 - 37534433
Alignment:
Q  22 agacaggatcttggaaaaacagtatagattgttgcgagtgggatggtatcacgtgcaacaccatatcagatcacgtgatcggtttggaccttagttgcaa 121  Q
    |||||| ||||||| ||||||||| ||||||||| |||||||||||| |||||||| ||||||| |||||||||||||| ||| ||||||| ||||||||    
T  37534617 agacagaatcttgggaaaacagtacagattgttgtgagtgggatggtgtcacgtgcgacaccatgtcagatcacgtgattggtctggacctcagttgcaa 37534518  T
Q  122 ctatctgaaaggtgaattacatctcaatagcaccatctttcagcttaaataccttcaacaactcaacttggcttttaatcatttt 206  Q
    | |||| |||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  37534517 caatctaaaaggtgaattacatcccaatagcaccatctttcagcttaaacaccttcaacaactcaacttggcttttaatcatttt 37534433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 22 - 206
Target Start/End: Complemental strand, 37713135 - 37712951
Alignment:
Q  22 agacaggatcttggaaaaacagtatagattgttgcgagtgggatggtatcacgtgcaacaccatatcagatcacgtgatcggtttggaccttagttgcaa 121  Q
    |||||| ||||||| ||||||||| ||||||||| |||||||||||| |||||||| ||||||| |||||||||||||| ||| ||||||| ||||||||    
T  37713135 agacagaatcttggcaaaacagtacagattgttgtgagtgggatggtgtcacgtgcgacaccatgtcagatcacgtgattggtctggacctcagttgcaa 37713036  T
Q  122 ctatctgaaaggtgaattacatctcaatagcaccatctttcagcttaaataccttcaacaactcaacttggcttttaatcatttt 206  Q
    | |||| |||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  37713035 caatctaaaaggtgaattacatcccaatagcaccatctttcagcttaaacaccttcaacaactcaacttggcttttaatcatttt 37712951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 22 - 206
Target Start/End: Complemental strand, 37595841 - 37595657
Alignment:
Q  22 agacaggatcttggaaaaacagtatagattgttgcgagtgggatggtatcacgtgcaacaccatatcagatcacgtgatcggtttggaccttagttgcaa 121  Q
    |||||| ||||||| ||||||||| ||||||||| |||||||||||| |||||||| ||||||| |||||||||||||| ||| ||||||| ||||||||    
T  37595841 agacagaatcttgggaaaacagtacagattgttgtgagtgggatggtgtcacgtgcgacaccatgtcagatcacgtgattggtctggacctcagttgcaa 37595742  T
Q  122 ctatctgaaaggtgaattacatctcaatagcaccatctttcagcttaaataccttcaacaactcaacttggcttttaatcatttt 206  Q
    | |||| |||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||    
T  37595741 caatcttaaaggtgaattacatcccaatagcaccatctttcagcttaaacaccttcaacaactcaacttggcttttaataatttt 37595657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 22 - 206
Target Start/End: Complemental strand, 37825406 - 37825222
Alignment:
Q  22 agacaggatcttggaaaaacagtatagattgttgcgagtgggatggtatcacgtgcaacaccatatcagatcacgtgatcggtttggaccttagttgcaa 121  Q
    |||||| ||||||| ||||||||| ||||||||| |||||||||||| |||||||| ||||||| |||||||||||||| ||| ||||||| ||||||||    
T  37825406 agacagaatcttgggaaaacagtacagattgttgtgagtgggatggtgtcacgtgcgacaccatgtcagatcacgtgattggtctggacctcagttgcaa 37825307  T
Q  122 ctatctgaaaggtgaattacatctcaatagcaccatctttcagcttaaataccttcaacaactcaacttggcttttaatcatttt 206  Q
    | |||| |||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||    
T  37825306 caatctaaaaggtgaattacatcccaatagcaccatctttcagcttaaacaccttcaacaactcaacttggcttttaatgatttt 37825222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 22 - 206
Target Start/End: Complemental strand, 37641389 - 37641205
Alignment:
Q  22 agacaggatcttggaaaaacagtatagattgttgcgagtgggatggtatcacgtgcaacaccatatcagatcacgtgatcggtttggaccttagttgcaa 121  Q
    |||||| |||||||||||||| || ||||||||| |||||||||||| |||||||| ||||||| |||||||||||||| ||| ||||||| ||||||||    
T  37641389 agacagaatcttggaaaaacaatacagattgttgtgagtgggatggtgtcacgtgcgacaccatgtcagatcacgtgattggtctggacctcagttgcaa 37641290  T
Q  122 ctatctgaaaggtgaattacatctcaatagcaccatctttcagcttaaataccttcaacaactcaacttggcttttaatcatttt 206  Q
    | |||| |||||||||||||||| ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |||||    
T  37641289 caatctaaaaggtgaattacatcccaatagcaccatctttcagcttaaacaccttcaccaactcaacttggcttttaataatttt 37641205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 22 - 218
Target Start/End: Original strand, 37399470 - 37399666
Alignment:
Q  22 agacaggatcttggaaaaacagtatagattgttgcgagtgggatggtatcacgtgcaacaccatatcagatcacgtgatcggtttggaccttagttgcaa 121  Q
    |||||| ||||||| ||||||||| ||||||||| |||||||||||| |||||||| ||||||| |||||||||||||| ||| ||||||| ||||||||    
T  37399470 agacagaatcttgggaaaacagtacagattgttgtgagtgggatggtgtcacgtgcgacaccatgtcagatcacgtgattggtctggacctcagttgcaa 37399569  T
Q  122 ctatctgaaaggtgaattacatctcaatagcaccatctttcagcttaaataccttcaacaactcaacttggcttttaatcattttcttgggtcttca 218  Q
    | | || |||||||||||||||| |||||||| |||||||||||||| | ||||||||||||| || |||||||||||| |||||  ||||||||||    
T  37399570 caaactaaaaggtgaattacatcccaatagcatcatctttcagcttagacaccttcaacaacttaatttggcttttaataatttttctgggtcttca 37399666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 22 - 219
Target Start/End: Original strand, 37391604 - 37391801
Alignment:
Q  22 agacaggatcttggaaaaacagtatagattgttgcgagtgggatggtatcacgtgcaacaccatatcagatcacgtgatcggtttggaccttagttgcaa 121  Q
    |||||| ||||||||||||||||| | |||||||| ||||||||||| |||||||| ||||||| |||||||||||||| |   | ||||| ||||||||    
T  37391604 agacagaatcttggaaaaacagtacaaattgttgcaagtgggatggtgtcacgtgcgacaccatgtcagatcacgtgattgaactagacctcagttgcaa 37391703  T
Q  122 ctatctgaaaggtgaattacatctcaatagcaccatctttcagcttaaataccttcaacaactcaacttggcttttaatcattttcttgggtcttcat 219  Q
    | || |||| ||||| ||||||| ||||||||| ||||||||||||| | |||||||||||||||||||| |||| |||  |||| ||||||||||||    
T  37391704 caatttgaatggtgatttacatcccaatagcactatctttcagcttagacaccttcaacaactcaacttgtctttaaattttttttttgggtcttcat 37391801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 22 - 206
Target Start/End: Complemental strand, 37704179 - 37703995
Alignment:
Q  22 agacaggatcttggaaaaacagtatagattgttgcgagtgggatggtatcacgtgcaacaccatatcagatcacgtgatcggtttggaccttagttgcaa 121  Q
    |||||| ||||||||||| | | | |||||||||||||||||||||| |||||||| ||||| | || ||||||||||| |||||||| || ||||||||    
T  37704179 agacagaatcttggaaaaccggcacagattgttgcgagtgggatggtgtcacgtgcgacaccgtgtctgatcacgtgattggtttggatctcagttgcaa 37704080  T
Q  122 ctatctgaaaggtgaattacatctcaatagcaccatctttcagcttaaataccttcaacaactcaacttggcttttaatcatttt 206  Q
    | ||||||||||||||||||| |  |||||||| ||||   |||||| | |||||||||||||||||||||||||||||||||||    
T  37704079 caatctgaaaggtgaattacaacctaatagcacaatctacaagcttagacaccttcaacaactcaacttggcttttaatcatttt 37703995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 29 - 216
Target Start/End: Original strand, 37380985 - 37381172
Alignment:
Q  29 atcttggaaaaacagtatagattgttgcgagtgggatggtatcacgtgcaacaccatatcagatcacgtgatcggtttggaccttagttgcaactatctg 128  Q
    |||||||||||| | || ||||||||| | |||||||||| |||||||| || |||| |||||||| ||||| ||| ||||||| ||||||| | |||||    
T  37380985 atcttggaaaaataatacagattgttgtgggtgggatggtgtcacgtgcgactccatgtcagatcatgtgattggtctggacctcagttgcagcaatctg 37381084  T
Q  129 aaaggtgaattacatctcaatagcaccatctttcagcttaaataccttcaacaactcaacttggcttttaatcattttcttgggtctt 216  Q
    || ||||||||||||| ||||||||| ||||| ||||||| | ||||||||||||||||||||||||||||| |||||  ||||||||    
T  37381085 aatggtgaattacatcccaatagcacaatcttccagcttagacaccttcaacaactcaacttggcttttaataatttttctgggtctt 37381172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 22 - 217
Target Start/End: Complemental strand, 37430268 - 37430073
Alignment:
Q  22 agacaggatcttggaaaaacagtatagattgttgcgagtgggatggtatcacgtgcaacaccatatcagatcacgtgatcggtttggaccttagttgcaa 121  Q
    |||||| ||||||||||| | | | |||||| ||||||||||||||| |||||||| ||| ||| |  ||| | ||||| ||| ||||||||||||||||    
T  37430268 agacagaatcttggaaaaccggcacagattgctgcgagtgggatggtgtcacgtgcgacatcatgtacgattatgtgattggtctggaccttagttgcaa 37430169  T
Q  122 ctatctgaaaggtgaattacatctcaatagcaccatctttcagcttaaataccttcaacaactcaacttggcttttaatcattttcttgggtcttc 217  Q
    | ||||||| |||||||||     |||||||||||||||||| |||||| ||||||||||||||||||||||||||||| ||||| | ||||||||    
T  37430168 caatctgaacggtgaattagcggccaatagcaccatctttcaacttaaacaccttcaacaactcaacttggcttttaatgattttttcgggtcttc 37430073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 23 - 206
Target Start/End: Complemental strand, 37698303 - 37698120
Alignment:
Q  23 gacaggatcttggaaaaacagtatagattgttgcgagtgggatggtatcacgtgcaacaccatatcagatcacgtgatcggtttggaccttagttgcaac 122  Q
    ||||| |||||||||||||| || |||||||||| ||||||||||| |||||||  ||||    || ||| ||||||| ||||||||||| |||||||||    
T  37698303 gacagaatcttggaaaaacaatacagattgttgcaagtgggatggtgtcacgtgtgacactgagtcggattacgtgattggtttggacctcagttgcaac 37698204  T
Q  123 tatctgaaaggtgaattacatctcaatagcaccatctttcagcttaaataccttcaacaactcaacttggcttttaatcatttt 206  Q
     || |||||||||||||||||| ||||||||| ||||| ||||||| |  |||||||||||| || |||||||||||| |||||    
T  37698203 aatttgaaaggtgaattacatcccaatagcactatcttccagcttagacgccttcaacaacttaatttggcttttaataatttt 37698120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 30 - 206
Target Start/End: Original strand, 37411966 - 37412141
Alignment:
Q  30 tcttggaaaaacagtatagattgttgcgagtgggatggtatcacgtgcaacaccatatcagatcacgtgatcggtttggaccttagttgcaactatctga 129  Q
    ||||||||||| | || |||||||||||||||| ||||| ||| |||| ||||| | |  ||||| ||||| |||||||||||||| |||||| |||| |    
T  37411966 tcttggaaaaataatacagattgttgcgagtggtatggtgtcatgtgcgacaccgttttggatcatgtgattggtttggaccttaggtgcaacaatctta 37412065  T
Q  130 aaggtgaattacatctcaatagcaccatctttcagcttaaataccttcaacaactcaacttggcttttaatcatttt 206  Q
    ||||||||||||||||||||||||| |||||  | |||||| ||||||||| ||||||| ||||||||||| |||||    
T  37412066 aaggtgaattacatctcaatagcactatcttcaaacttaaacaccttcaacgactcaac-tggcttttaatgatttt 37412141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 97; Significance: 8e-48; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 22 - 218
Target Start/End: Complemental strand, 14554543 - 14554347
Alignment:
Q  22 agacaggatcttggaaaaacagtatagattgttgcgagtgggatggtatcacgtgcaacaccatatcagatcacgtgatcggtttggaccttagttgcaa 121  Q
    |||||| |||||||||||| |||| |||||||||||||||||||||| |||||||| |||||||||||| ||||||||| |   | ||||||||||||||    
T  14554543 agacagaatcttggaaaaagagtacagattgttgcgagtgggatggtgtcacgtgcgacaccatatcaggtcacgtgattgaactagaccttagttgcaa 14554444  T
Q  122 ctatctgaaaggtgaattacatctcaatagcaccatctttcagcttaaataccttcaacaactcaacttggcttttaatcattttcttgggtcttca 218  Q
    | || |||| |||||||||||||  |||||||| ||||| ||||||| | ||||||||||||||||| | ||||||||| || || |||||||||||    
T  14554443 caatttgaatggtgaattacatcctaatagcactatcttccagcttagacaccttcaacaactcaacctagcttttaatgatatttttgggtcttca 14554347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 82; Significance: 7e-39; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 29 - 218
Target Start/End: Original strand, 16841526 - 16841715
Alignment:
Q  29 atcttggaaaaacagtatagattgttgcgagtgggatggtatcacgtgcaacaccatatcagatcacgtgatcggtttggaccttagttgcaactatctg 128  Q
    ||||||||||||| |||  ||||||||| ||||||||||| |||||||  ||||   ||||||| ||||| | ||||||||||| ||||||||| || ||    
T  16841526 atcttggaaaaacggtacggattgttgcaagtgggatggtgtcacgtgtgacactgaatcagattacgtggttggtttggacctcagttgcaacaatttg 16841625  T
Q  129 aaaggtgaattacatctcaatagcaccatctttcagcttaaataccttcaacaactcaacttggcttttaatcattttcttgggtcttca 218  Q
    |||||||||||||||| ||||||||| ||| | ||| | | | ||||||||||||||||||||||||||||| |||||  ||||||||||    
T  16841626 aaaggtgaattacatcccaatagcactatcctccagttaagacaccttcaacaactcaacttggcttttaataatttttctgggtcttca 16841715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 47 - 206
Target Start/End: Original strand, 24216411 - 24216570
Alignment:
Q  47 agattgttgcgagtgggatggtatcacgtgcaacaccatatcagatcacgtgatcggtttggaccttagttgcaactatctgaaaggtgaattacatctc 146  Q
    |||||||||||||||||||||  ||| |||  |||| |  ||| || ||||||| ||| ||||||||||||||||| ||||||||||||| |||||||      
T  24216411 agattgttgcgagtgggatggggtcatgtgtgacactaggtcaaattacgtgattggtctggaccttagttgcaacaatctgaaaggtgagttacatcca 24216510  T
Q  147 aatagcaccatctttcagcttaaataccttcaacaactcaacttggcttttaatcatttt 206  Q
    ||| |||| |||||  |||||| | |||||||||||||||||||||| |||||| |||||    
T  24216511 aattgcactatcttcaagcttagacaccttcaacaactcaacttggcctttaataatttt 24216570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University