View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19368_low_67 (Length: 229)
Name: NF19368_low_67
Description: NF19368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19368_low_67 |
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Alignment Details
Target: chr1 (Bit Score: 171; Significance: 6e-92; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 38 - 212
Target Start/End: Original strand, 44534463 - 44534637
Alignment:
| Q |
38 |
atttaaaaaagcatcattatgtatgttcatgttcatctgggttctgacacaatacattctgaaaatcatgggccagcttaaaagtagatcattggagttg |
137 |
Q |
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| T |
44534463 |
atttgaaaaagcatcattatgtatgttcatgttcatctgggttctgacacaatacattctgaaaatcatgggccagcttaaaagtagatcattggagttg |
44534562 |
T |
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| Q |
138 |
tgggtcagattcaagccgtcatgaactgagatcagagattcaatgttgttaaacagttcacatgggccagcaaag |
212 |
Q |
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| T |
44534563 |
tgggtcagattcaagccgtcatgaactgagatcagagattcaatgttgttaaacagttcacatgggccagcaaag |
44534637 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 44534490 - 44534445
Alignment:
| Q |
1 |
gaacatacataatgatgctttttcaaatgggaccatgatttaaaaa |
46 |
Q |
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| T |
44534490 |
gaacatacataatgatgctttttcaaatgggaccatgatttaaaaa |
44534445 |
T |
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