View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19368_low_7 (Length: 563)
Name: NF19368_low_7
Description: NF19368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19368_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 420; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 54 - 545
Target Start/End: Complemental strand, 29258998 - 29258500
Alignment:
| Q |
54 |
agacaacatattcaacgttttcatgcctcaaaatattcgtttaactcagtagnnnnnnnnnnnncttagactgtgccctctttt------gcatacaaaa |
147 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |
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| T |
29258998 |
agacaacatattcaacgttttcatgcctcaaaatattcgtttaactcagtagttttttctttttcttagactgtgccctctttttcttttgcatacaaaa |
29258899 |
T |
|
| Q |
148 |
aagagagttattatgacctatttaaagaattttgtgagattctaatattagaaaactatgaatgaataatcatggatcagcaagcagtgttgtggatggt |
247 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29258898 |
aagagagttattatgacctatttaaagaattttgtgagattctaatattagaaaactatgaatgaataatcatggatcagcaagcagtgttgtggatggt |
29258799 |
T |
|
| Q |
248 |
ctaagatcttacgaaatagtatgaacgtgaaaacacatatgaatgcaccttaagaatcctacaagacaaagcaaagtttaagatagtttgatgtgtgctt |
347 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29258798 |
ctaagatcttacgaaatagtatgaacgtgaaaacacatatgaatgcaccttaagaatcctacaagacaaagcaaagtttaagatagtttgatgtgtgctt |
29258699 |
T |
|
| Q |
348 |
gtcattttctggtctatatttatgtccacccaccttataattgtgacacattatttaccccttcacacaatacctcatttagatatctttctgtctccac |
447 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29258698 |
gtcattttctggtctatatttatgtccatccaccttataattgtgacacattattaaccccttcacacaatacctcatttagatatctttctgtctccac |
29258599 |
T |
|
| Q |
448 |
caaccgccttcaattccaaaatgattgtccattgttttctcgtaattgtgataaagaaagtcacgtaaaatgaaacaaattat-tgtttgggtcaatca |
545 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |
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| T |
29258598 |
caaccgccttcaattccaaaatgattgtccattgttttctcgtaattgtgataaagaaagtcacgtaaaatgaaacaaattatgtgtttgggacaatca |
29258500 |
T |
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