View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19368_low_9 (Length: 542)
Name: NF19368_low_9
Description: NF19368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19368_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-115; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 1 - 326
Target Start/End: Complemental strand, 1828817 - 1828480
Alignment:
| Q |
1 |
gagtggtagcattgaataaatttgaaagatcatgcaagatgaaaaatcactgaagataataaaagggatggaacaagagaaaatgccgcgggatgcacaa |
100 |
Q |
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| T |
1828817 |
gagtggtagcattgaataaatttgaaagatcatgcaagatgaaaaatcactgaagataataaaagggatggaacaagagaaaatgctgcgggatgcacaa |
1828718 |
T |
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| Q |
101 |
tttgaactcatttcactatccattttcggtgttcaannnnnnncctgagaatttgatgcgttttat--------------------atgtacacccacct |
180 |
Q |
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| T |
1828717 |
tttgaactcatttcactgtccattttcggtgttcaatttttttcctgagaatttgatgctttttattttttcgatgtgtagaatgcatgtacacccacct |
1828618 |
T |
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| Q |
181 |
aaactaaattcttgaaacgattttacacatgcacacccacataatttcaattttcatatatgtcttgcgtgagtttagattagtggagggtgtaaccaaa |
280 |
Q |
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| T |
1828617 |
aaactaaattcttgaaacgattttgcaca--------cacataatttcaattttcatatatgtcttgcgtgagtttagattagtggagggtgtaaccaaa |
1828526 |
T |
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| Q |
281 |
ttgcgttttcgaaaactgggcactacaccacatttcttcaattata |
326 |
Q |
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| T |
1828525 |
ttgcgttttcgaaaactgggcactacgccacatttcttcaattata |
1828480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 327 - 516
Target Start/End: Complemental strand, 1826793 - 1826605
Alignment:
| Q |
327 |
atgtcatgtatatggtcaaacttaatctgagttcatacaggttttcagaatttatcgggagcaattgagagatctataaactcagaaatttaattcatgt |
426 |
Q |
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| T |
1826793 |
atgtcatgtatatggtcaaacttaatctgagttcatacaggttttcagaatttatcgggagcaattgagagatctataaactcagaaatttaattcatgt |
1826694 |
T |
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| Q |
427 |
agattttcaaatatttgcatatggactatttggggattatgattaggcgtaggaataggttaggccgaactagacttcgcaaggcttgag |
516 |
Q |
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| T |
1826693 |
agattttcaaatatttgcatatggattatttggggattatgatta-gagtgggaataggttaggccgaactaggctttgcaaggcttgag |
1826605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 470 - 518
Target Start/End: Original strand, 2758836 - 2758884
Alignment:
| Q |
470 |
taggcgtaggaataggttaggccgaactagacttcgcaaggcttgagcc |
518 |
Q |
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|||| |||||||||||||||||||| |||| ||| |||||| ||||||| |
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| T |
2758836 |
taggggtaggaataggttaggccgagctaggctttgcaagggttgagcc |
2758884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 475 - 511
Target Start/End: Original strand, 29697323 - 29697359
Alignment:
| Q |
475 |
gtaggaataggttaggccgaactagacttcgcaaggc |
511 |
Q |
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| T |
29697323 |
gtaggaataggttaggccgagctaggcttcgcaaggc |
29697359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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