View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1936_high_11 (Length: 391)
Name: NF1936_high_11
Description: NF1936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1936_high_11 |
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Alignment Details
Target: chr7 (Bit Score: 181; Significance: 1e-97; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 157 - 373
Target Start/End: Complemental strand, 14538903 - 14538687
Alignment:
| Q |
157 |
tatattttgtataaatctctatgcaccaagagtataaatcttactatgttttgtgttaatttgtaaaaagattttacaatatatatgcctaaattcagag |
256 |
Q |
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| T |
14538903 |
tatattttgtataaatctctatgcaccaacgctataaatcttactatgtattgtgttaatttttaaaaagattttacaatatatatgcctaaattcagag |
14538804 |
T |
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| Q |
257 |
gaggtgtaaaacacgtgagatcatcacattaggttaagagtgagtgagtctccaacatcttatactcataacgttgttattaccaacgtaacacatcttg |
356 |
Q |
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| T |
14538803 |
gaggtgttaaacacgtgagatcatcacattaggttaagagtgagtgagtctccaacatcttatactcttaatgttgttattaccaacgtaacacgtcttg |
14538704 |
T |
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| Q |
357 |
tgattacaccgtcaaga |
373 |
Q |
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| T |
14538703 |
tgattacaccgtcaaga |
14538687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 14 - 134
Target Start/End: Complemental strand, 14539086 - 14538966
Alignment:
| Q |
14 |
agacgaccatgattctgtttgtcacagtagaccaccggtaagattctcactcacttgtataaatgttactttgtgtgtatgattatgaatgttcattgat |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |
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| T |
14539086 |
agacgaccatgattctgtttgtcacagtagaccaccggtaagattctcactcacttgtataaatggtactttgtgtgtatgattatgaatgatcattgat |
14538987 |
T |
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| Q |
114 |
tggttttatatataaagtgat |
134 |
Q |
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| T |
14538986 |
tggttttatatataaagtgat |
14538966 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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