View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1936_high_12 (Length: 381)
Name: NF1936_high_12
Description: NF1936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1936_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 55 - 372
Target Start/End: Original strand, 46503193 - 46503510
Alignment:
| Q |
55 |
ccccacaagaactacaaagcaataagccaaacactctcttttgctcttgtttcttcctacatacaaaccaccttcttttctattttgtcatatgaacata |
154 |
Q |
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| T |
46503193 |
ccccacaagaactacaaagcaataagccaaacactctcttttgctcttgtttcttcctacatacaaaccaccttcttttctattttgtcatatgaacata |
46503292 |
T |
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| Q |
155 |
tctatatcttaaaaaacagtgattattatttagttttttaacaaagaatggcttcatcatctgaactaggcttggattgcaagccacatagctactccat |
254 |
Q |
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| T |
46503293 |
tctatatcttaaaaaacagtgcttataatttatttttttaacaaagaatggcttcatcatctgaactaggcttggattgcaagccacatagctactccat |
46503392 |
T |
|
| Q |
255 |
gttactgaaatcatttggagaacaaagtgatcaaagctacaaactcgaagaatttgtttctcgcttagaagaagaacgtctcaaaatcgatgctttcaaa |
354 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46503393 |
gttactgaaatcatttggagaacaaagtgatcaaagctacaaactcgaagaatttgtttctcgcttagaagaagaacgtctcaaaatcgatgctttcaaa |
46503492 |
T |
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| Q |
355 |
cgtgagcttcctctctgc |
372 |
Q |
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|||||||||||||||||| |
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| T |
46503493 |
cgtgagcttcctctctgc |
46503510 |
T |
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