View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1936_high_21 (Length: 269)
Name: NF1936_high_21
Description: NF1936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1936_high_21 |
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Alignment Details
Target: chr2 (Bit Score: 230; Significance: 1e-127; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 7954496 - 7954247
Alignment:
| Q |
1 |
atactcatatcgccaaacaattcagctcacaagctcaatatattgcttcaattagtaccacttagatgaaatgcatatttagatcatatggaagagcata |
100 |
Q |
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| T |
7954496 |
atactcatatcgccaaacaattcagctcacaagctcaatatattgcttcaattagtaccacttagatgaaatgcatatttagatcatatggaagagcata |
7954397 |
T |
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| Q |
101 |
catttaaactgtttggtggttggaggccaacagtttgagccggtgaaaaattgtatcgtcaattcattcacgaaagtcagccaacgctttataaactaaa |
200 |
Q |
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| T |
7954396 |
catttaaactgtttggtggttagaggccaacagtttgagccggtgaaaaattgaatcgtcgattcattcatgaaagtcagccagcgctttataaactaaa |
7954297 |
T |
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| Q |
201 |
tgaggtaattttgcaacagctgaggaaaagtacttttgcccttagttttg |
250 |
Q |
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| T |
7954296 |
tgaggtaattttgcaacagctgaggaaaagtacttttgcccttagttttg |
7954247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 61
Target Start/End: Original strand, 26135414 - 26135463
Alignment:
| Q |
12 |
gccaaacaattcagctcacaagctcaatatattgcttcaattagtaccac |
61 |
Q |
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| T |
26135414 |
gccatacaattcagctcacaagctcagtatattgctccaattagtaccac |
26135463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 74 - 153
Target Start/End: Original strand, 26135557 - 26135631
Alignment:
| Q |
74 |
catatttagatcatatggaagagcatacatttaaactgtttggtggttggaggccaacagtttgagccggtgaaaaattg |
153 |
Q |
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| T |
26135557 |
catatttagatcatatggaagagca-----ttaaactgtttggtgtttagagggtaacactttgagcctgtgagaaattg |
26135631 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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