View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1936_high_29 (Length: 242)

Name: NF1936_high_29
Description: NF1936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1936_high_29
NF1936_high_29
[»] chr4 (18 HSPs)
chr4 (1-242)||(3921896-3922134)
chr4 (23-242)||(3935244-3935460)
chr4 (1-242)||(4023103-4023338)
chr4 (1-242)||(3985027-3985262)
chr4 (28-242)||(4000211-4000422)
chr4 (1-242)||(4007945-4008180)
chr4 (22-242)||(3799923-3800132)
chr4 (1-242)||(3957352-3957593)
chr4 (1-100)||(3815701-3815800)
chr4 (17-242)||(3998956-3999175)
chr4 (1-100)||(3808127-3808226)
chr4 (22-91)||(4216870-4216939)
chr4 (171-242)||(3815805-3815876)
chr4 (171-232)||(3808231-3808292)
chr4 (139-234)||(4216997-4217092)
chr4 (173-242)||(3936881-3936950)
chr4 (7-55)||(4000154-4000202)
chr4 (24-94)||(4016406-4016476)


Alignment Details
Target: chr4 (Bit Score: 168; Significance: 4e-90; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 3922134 - 3921896
Alignment:
Q  1 gagatgaacaatcatatcattctttgttgtcttgtactccaaccactctggaacactacttccaggatacacatacaatgcttgatgagaatcaaagtta 100  Q
    ||||| |||||||||  ||| | |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||||||||    
T  3922134 gagatcaacaatcatgccatccattgttgtcttgtactccaaccactttggaacactacttccaggatacacatacactgcttgataagaatcaaagtta 3922035  T
Q  101 tctttgttgtaatcaacataactttcaacataatcatcatgttccagtgttgataaatgttgatgtgtaaacttcatcaaattgattttcagattcaacc 200  Q
    |||||||   ||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  3922034 tctttgt---aatcaacataactttcagcatattcatcatgttccagtgttgataaatgttgatgtgtaaacttcatcaaattgatttgcagattcaacc 3921938  T
Q  201 caatatttatgagagaactttcatccaagttcaagcaattcc 242  Q
    |||||||||| ||||||  |||||||||||| ||||||||||    
T  3921937 caatatttatcagagaaagttcatccaagttgaagcaattcc 3921896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 23 - 242
Target Start/End: Complemental strand, 3935460 - 3935244
Alignment:
Q  23 tttgttgtcttgtactccaaccactctggaacactacttccaggatacacatacaatgcttgatgagaatcaaagttatctttgttgtaatcaacataac 122  Q
    ||||||||||||||||| ||||| ||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||   |||||||||||     
T  3935460 tttgttgtcttgtactcaaaccaatctggaacactacttccagaatacacatacaatgcttgataagaatcaaagttatctttgt---aatcaacataag 3935364  T
Q  123 tttcaacataatcatcatgttccagtgttgataaatgttgatgtgtaaacttcatcaaattgattttcagattcaacccaatatttatgagagaactttc 222  Q
    |||||||||||||||||||||||| ||||||||||| ||||| || |||||||||||||||||||| ||||||||||||||||||||| |||||||  ||    
T  3935363 tttcaacataatcatcatgttccactgttgataaatcttgatatgcaaacttcatcaaattgatttgcagattcaacccaatatttatcagagaacgctc 3935264  T
Q  223 atccaagttcaagcaattcc 242  Q
    ||||||||||||||||||||    
T  3935263 atccaagttcaagcaattcc 3935244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 4023103 - 4023338
Alignment:
Q  1 gagatgaacaatcatatcattctttgttgtcttgtactccaaccactctggaacactacttccaggatacacatacaatgcttgatgagaatcaaagtta 100  Q
    ||||| ||||||||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |||||||| |||||||||||||    
T  4023103 gagatcaacaatcatgtcatcctttgttgtcttgtactccaaccactctggaatactacttccaggataaacatacactgcttgataagaatcaaagtta 4023202  T
Q  101 tctttgttgtaatcaacataactttcaacataatcatcatgttccagtgttgataaatgttgatgtgtaaacttcatcaaattgattttcagattcaacc 200  Q
    |||   |||||||||||||||||||||||    | ||||||||||||||| ||||||||||||| ||||||||| |||||||| |||| |||||||||||    
T  4023203 tct---ttgtaatcaacataactttcaac---gtgatcatgttccagtgtcgataaatgttgatatgtaaactttatcaaattcatttgcagattcaacc 4023296  T
Q  201 caatatttatgagagaactttcatccaagttcaagcaattcc 242  Q
    |||||||||||||||||  ||||||||||||| |||||||||    
T  4023297 caatatttatgagagaatgttcatccaagttccagcaattcc 4023338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 3985027 - 3985262
Alignment:
Q  1 gagatgaacaatcatatcattctttgttgtcttgtactccaaccactctggaacactacttccaggatacacatacaatgcttgatgagaatcaaagtta 100  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |||||||| | ||    
T  3985027 gagatcaacaatcatatcattctttgttgtcttgtactccaaccactctggaacactacttccaggatatacatacactgcttgataagaatcaaggata 3985126  T
Q  101 tctttgttgtaatcaacataactttcaacataatcatcatgttccagtgttgataaatgttgatgtgtaaacttcatcaaattgattttcagattcaacc 200  Q
    |||   |||||||||||||| ||||||||    | ||||||||||||||| ||||||||||||| || ||||| ||||||||||||||  ||||||||||    
T  3985127 tct---ttgtaatcaacatagctttcaac---tttatcatgttccagtgtcgataaatgttgatatgcaaactccatcaaattgatttgaagattcaacc 3985220  T
Q  201 caatatttatgagagaactttcatccaagttcaagcaattcc 242  Q
    |||||||||||||||||| ||||||||| || ||||||||||    
T  3985221 caatatttatgagagaacgttcatccaatttgaagcaattcc 3985262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 28 - 242
Target Start/End: Original strand, 4000211 - 4000422
Alignment:
Q  28 tgtcttgtactccaaccactctggaacactacttccaggatacacatacaatgcttgatgagaatcaaagttatctttgttgtaatcaacataactttca 127  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||  |  ||||| || ||   ||||| ||||||| |||    
T  4000211 tgtcttgtactccaaccactctggaacactacttccaggatatacatacaatgcttgataagaagaatggttatattcgt---aatcagcataactgtca 4000307  T
Q  128 acataatcatcatgttccagtgttgataaatgttgatgtgtaaacttcatcaaattgattttcagattcaacccaatatttatgagagaactttcatcca 227  Q
    |||||||||||||||||||||||  |||||||||||| || |||||| || | ||||||||||| ||| ||||||||||||| |||||||  ||||||||    
T  4000308 acataatcatcatgttccagtgtcaataaatgttgatatgcaaacttgattagattgattttcatattgaacccaatatttacgagagaatgttcatcca 4000407  T
Q  228 agttcaagcaattcc 242  Q
    |||| ||||||||||    
T  4000408 agttgaagcaattcc 4000422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 4007945 - 4008180
Alignment:
Q  1 gagatgaacaatcatatcattctttgttgtcttgtactccaaccactctggaacactacttccaggatacacatacaatgcttgatgagaatcaaagtta 100  Q
    ||||| |||||||||||||| || |||||| |||||| |||||||||| |||||  ||||||| ||||||||||| |||||||||| |||| ||||  |     
T  4007945 gagatcaacaatcatatcatcctgtgttgttttgtacgccaaccactcaggaacggtacttcctggatacacataaaatgcttgataagaaccaaacgtt 4008044  T
Q  101 tctttgttgtaatcaacataactttcaacataatcatcatgttccagtgttgataaatgttgatgtgtaaacttcatcaaattgattttcagattcaacc 200  Q
    | |||||   ||||||||| ||||||||||||    | |||||||||||| ||||||||||||| || ||||||||| | ||||||||  | |||||||     
T  4008045 tgtttgt---aatcaacattactttcaacata---gttatgttccagtgtcgataaatgttgatatgcaaacttcattatattgatttgaatattcaact 4008138  T
Q  201 caatatttatgagagaactttcatccaagttcaagcaattcc 242  Q
    |||||||||| ||||||| || ||||| |||||| |||||||    
T  4008139 caatatttataagagaacgtttatccaggttcaaacaattcc 4008180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 22 - 242
Target Start/End: Original strand, 3799923 - 3800132
Alignment:
Q  22 ctttgttgtcttgtactccaaccactctggaacactacttccaggatacacatacaatgcttgatgagaatcaaagttatctttgttgtaatcaacataa 121  Q
    |||||||||||||||||||||||||| ||||||||||||||||| ||| ||||||  |||||||| |||| |||||| |||||        |||||||||    
T  3799923 ctttgttgtcttgtactccaaccactatggaacactacttccagaataaacatacggtgcttgataagaagcaaagtaatctt--------tcaacataa 3800014  T
Q  122 ctttcaacataatcatcatgttccagtgttgataaatgttgatgtgtaaacttcatcaaattgattttcagattcaacccaatatttatgagagaacttt 221  Q
    |||||| ||||    | |||||||||||| ||||||||||||| || ||||||||||||||| || |  |||||||||| | ||| ||||||||||  ||    
T  3800015 ctttcagcata---cttatgttccagtgtcgataaatgttgatatgcaaacttcatcaaattaatctgtagattcaaccaattatgtatgagagaaagtt 3800111  T
Q  222 catccaagttcaagcaattcc 242  Q
    | || ||||||||||||||||    
T  3800112 cttcaaagttcaagcaattcc 3800132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 3957593 - 3957352
Alignment:
Q  1 gagatgaacaatcatatcattctttgttgtcttgtactccaaccactctggaacactacttccaggatacacatacaatgcttgatgagaatcaaagtta 100  Q
    ||||| || ||||||||||| || || |||| ||||||  ||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||| |||    
T  3957593 gagatcaataatcatatcatcctgtgctgtcctgtacttgaaccactctggaacactacttccaggatacaaatacactgcttgataagaatcaaattta 3957494  T
Q  101 tctttgttgtaatcaacataactttca---acataatcatcatgttccagtgttgataaatgttgatgtgtaaacttcatcaaattgattttcagattca 197  Q
    |||   ||||||||| |||  ||||||      | | ||| ||||  |||||  | | ||||| ||| || |||||||||||||||||| | || |||||    
T  3957493 tct---ttgtaatcagcattgctttcattgcttttagcatgatgtaacagtgccgctgaatgtcgatatgcaaacttcatcaaattgatctgcacattca 3957397  T
Q  198 acccaatatttatgagagaactttcatccaagttcaagcaattcc 242  Q
    ||||||||||||||||||| | |||||||||||||||||||||||    
T  3957396 acccaatatttatgagagagcattcatccaagttcaagcaattcc 3957352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 3815701 - 3815800
Alignment:
Q  1 gagatgaacaatcatatcattctttgttgtcttgtactccaaccactctggaacactacttccaggatacacatacaatgcttgatgagaatcaaagtta 100  Q
    ||||| || ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| || |||| ||||||||    
T  3815701 gagatcaataatcatatcatcctttgttgtcttgtactccaaccactctggaatactacttccaggatacacatacattgcttcatcagaaccaaagtta 3815800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 17 - 242
Target Start/End: Original strand, 3998956 - 3999175
Alignment:
Q  17 tcattctttgttgtcttgtactccaaccactctggaacactacttccaggatacacatacaatgcttgatgagaatcaaagttatctttgttgtaatcaa 116  Q
    |||| ||||||||| |||||||||||| |||||| |||||| ||||| ||||| |||||||||||||||| |||| |||| |||| |   ||||||||||    
T  3998956 tcatcctttgttgttttgtactccaacgactctgaaacactgcttcctggataaacatacaatgcttgataagaaccaaacttatgt---ttgtaatcaa 3999052  T
Q  117 cataactttcaacataatcatcatgttccagtgttgataaatgttgatgtgtaaacttcatcaaattgattttcagattcaacccaatatttatgagaga 216  Q
    ||| ||||||||||||    | |||||||| ||| ||  ||||||||| || |||||| || | ||||||||  | ||||||| ||| ||||||| ||||    
T  3999053 cattactttcaacata---gttatgttccaatgtcgaataatgttgatatgcaaactttattatattgatttgaatattcaactcaacatttatgtgaga 3999149  T
Q  217 actttcatccaagttcaagcaattcc 242  Q
    || || ||||| |||||| |||||||    
T  3999150 acgtttatccaggttcaaacaattcc 3999175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 3808127 - 3808226
Alignment:
Q  1 gagatgaacaatcatatcattctttgttgtcttgtactccaaccactctggaacactacttccaggatacacatacaatgcttgatgagaatcaaagtta 100  Q
    ||||| ||||||| | |||| |||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| ||||| || |||| ||||||||    
T  3808127 gagatcaacaatcttgtcatcctttgttgtcttgtactcaaaccactctggaacattacttccaggatacacatacattgcttcatcagaaccaaagtta 3808226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 22 - 91
Target Start/End: Original strand, 4216870 - 4216939
Alignment:
Q  22 ctttgttgtcttgtactccaaccactctggaacactacttccaggatacacatacaatgcttgatgagaa 91  Q
    |||||||||||||||||||||||||| ||||||||||||||||| ||| ||||||  |||||||| ||||    
T  4216870 ctttgttgtcttgtactccaaccactatggaacactacttccagaataaacatacggtgcttgataagaa 4216939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 171 - 242
Target Start/End: Original strand, 3815805 - 3815876
Alignment:
Q  171 acttcatcaaattgattttcagattcaacccaatatttatgagagaactttcatccaagttcaagcaattcc 242  Q
    ||||||| ||||||||||  | ||||||||||| ||||||||||||||||||||||||||||  ||||||||    
T  3815805 acttcattaaattgatttgaacattcaacccaacatttatgagagaactttcatccaagttctcgcaattcc 3815876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 171 - 232
Target Start/End: Original strand, 3808231 - 3808292
Alignment:
Q  171 acttcatcaaattgattttcagattcaacccaatatttatgagagaactttcatccaagttc 232  Q
    ||||||| ||||||||||  | ||||||||||| ||||||||||||||||||||||||||||    
T  3808231 acttcattaaattgatttgaacattcaacccaacatttatgagagaactttcatccaagttc 3808292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 234
Target Start/End: Original strand, 4216997 - 4217092
Alignment:
Q  139 atgttccagtgttgataaatgttgatgtgtaaacttcatcaaattgattttcagattcaacccaatatttatgagagaactttcatccaagttcaa 234  Q
    |||||||||||| ||||||||||||| || |||| ||||| |||| || |  |||||||||| ||||| ||||||||||  ||| || ||||||||    
T  4216997 atgttccagtgtcgataaatgttgatatgcaaacatcatctaattaatctgtagattcaaccaaatatgtatgagagaaagttcttcaaagttcaa 4217092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 173 - 242
Target Start/End: Complemental strand, 3936950 - 3936881
Alignment:
Q  173 ttcatcaaattgattttcagattcaacccaatatttatgagagaactttcatccaagttcaagcaattcc 242  Q
    ||||| ||||||||||  | |||||||||||||||||||||||||| || |  ||||||| |||||||||    
T  3936950 ttcattaaattgatttgaacattcaacccaatatttatgagagaacatttaatcaagttccagcaattcc 3936881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 55
Target Start/End: Original strand, 4000154 - 4000202
Alignment:
Q  7 aacaatcatatcattctttgttgtcttgtactccaaccactctggaaca 55  Q
    ||||||||| |||| || ||||||||||||||||||||||||| |||||    
T  4000154 aacaatcatgtcatcctctgttgtcttgtactccaaccactctcgaaca 4000202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 94
Target Start/End: Original strand, 4016406 - 4016476
Alignment:
Q  24 ttgttgtcttgtactccaaccactctggaacactacttccaggatacacatacaatgcttgatgagaatca 94  Q
    |||||||||| || || ||||| ||||||||||  || || ||||||||||| | ||||||||||||||||    
T  4016406 ttgttgtcttatattcaaaccaatctggaacacagctccctggatacacataaagtgcttgatgagaatca 4016476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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