View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1936_high_4 (Length: 674)

Name: NF1936_high_4
Description: NF1936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1936_high_4
NF1936_high_4
[»] chr1 (13 HSPs)
chr1 (138-662)||(33861425-33861958)
chr1 (138-662)||(33918964-33919497)
chr1 (23-135)||(29255352-29255464)
chr1 (23-129)||(29254657-29254763)
chr1 (23-112)||(9981416-9981505)
chr1 (23-98)||(13263774-13263849)
chr1 (23-135)||(6631316-6631428)
chr1 (23-135)||(17238415-17238527)
chr1 (23-135)||(6632024-6632136)
chr1 (23-135)||(17237705-17237817)
chr1 (23-67)||(13264428-13264472)
chr1 (87-138)||(19990273-19990324)
chr1 (87-138)||(47966992-47967043)
[»] chr2 (9 HSPs)
chr2 (23-137)||(30617392-30617506)
chr2 (23-135)||(41320009-41320121)
chr2 (23-131)||(13545306-13545414)
chr2 (23-135)||(13544598-13544710)
chr2 (27-135)||(41320723-41320831)
chr2 (60-127)||(11169280-11169347)
chr2 (61-141)||(8143321-8143402)
chr2 (58-135)||(15555016-15555093)
chr2 (87-135)||(24983125-24983173)
[»] chr4 (3 HSPs)
chr4 (23-140)||(32527487-32527604)
chr4 (23-91)||(32526833-32526901)
chr4 (93-139)||(27110485-27110531)
[»] chr3 (4 HSPs)
chr3 (23-135)||(52362640-52362752)
chr3 (31-135)||(16674246-16674350)
chr3 (23-110)||(16673555-16673642)
chr3 (75-139)||(48207595-48207659)
[»] chr5 (3 HSPs)
chr5 (23-139)||(41516456-41516572)
chr5 (87-135)||(8469813-8469861)
chr5 (23-72)||(41517172-41517221)
[»] chr6 (2 HSPs)
chr6 (26-118)||(14125165-14125257)
chr6 (93-139)||(2479292-2479338)
[»] chr7 (1 HSPs)
chr7 (109-141)||(29525101-29525133)


Alignment Details
Target: chr1 (Bit Score: 462; Significance: 0; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 138 - 662
Target Start/End: Original strand, 33861425 - 33861958
Alignment:
Q  138 tttttagaatatacatgtagtaagcggttcgaataataatattaattgtgtttcaatataagctaattttgacatgtcttagcaatatttgactacctta 237  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  33861425 tttttagaatatacatgtagtaagcggttcgaatactaatattaattgtgtttcaatataagttaattttgacatgtcttagcaatatttgactacctta 33861524  T
Q  238 aaactaaagttgtataaaactaacaagtaaaatagaccactt-----------cttaagtggtagaaggtaaaaggataaaagatgtagatctcgttagg 326  Q
    ||||||||||||||||||||||||||||||||||||||||||           ||||||||||||||||||||||||||||||||||||||||| |||||    
T  33861525 aaactaaagttgtataaaactaacaagtaaaatagaccacttaaacaaaatttcttaagtggtagaaggtaaaaggataaaagatgtagatctcattagg 33861624  T
Q  327 ttgttcttgtcttgcaagatttaagcaagtcttttgcaatgaagaactttggttatgcaaagaaaatccttggcatgagaattacttgtgagttgtgaca 426  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33861625 ttgttcttgtcttgcaagatttaagcaagtcttttgcaatgaagaactttggttatgcaaagaaaatccttggcatgagaattacttgtgagttgtgaca 33861724  T
Q  427 atatgaatggtaaaattgtggttgtctcaacgaaattacattgagaaggtgttatggactttacatgagaaaatacaaatgtatcagtactctactctat 526  Q
    |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33861725 atatgaatggtaaa-ttgtggttgtctcaacgcaattacattgagaaggtgttatggactttacatgagaaaatacaaatgtatcagtactctactctat 33861823  T
Q  527 agtcatttcaaattgagttcagaataatgccctacaagtgaaaagatcaagaagatatagagatggttccatatgcatccacaaagatagctttgtgtat 626  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||    
T  33861824 agtcatttcaaattgagttcagaataatgccctacaagtgaaaagatcaagaagatatagagatggttccatatgcatccac-aagatagttttgtgtat 33861922  T
Q  627 gttaaggcatgcacaaggccgtatattgctcatatt 662  Q
    ||||||||||||||||||||||||||||||||||||    
T  33861923 gttaaggcatgcacaaggccgtatattgctcatatt 33861958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 138 - 662
Target Start/End: Complemental strand, 33919497 - 33918964
Alignment:
Q  138 tttttagaatatacatgtagtaagcggttcgaataataatattaattgtgtttcaatataagctaattttgacatgtcttagcaatatttgactacctta 237  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  33919497 tttttagaatatacatgtagtaagcggttcgaatactaatattaattgtgtttcaatataagttaattttgacatgtcttagcaatatttgactacctta 33919398  T
Q  238 aaactaaagttgtataaaactaacaagtaaaatagaccactt-----------cttaagtggtagaaggtaaaaggataaaagatgtagatctcgttagg 326  Q
    ||||||||||||||||||||||||||||||||||||||||||           ||||||||||||||||||||||||||||||||||||||||| |||||    
T  33919397 aaactaaagttgtataaaactaacaagtaaaatagaccacttaaacaaaatttcttaagtggtagaaggtaaaaggataaaagatgtagatctcattagg 33919298  T
Q  327 ttgttcttgtcttgcaagatttaagcaagtcttttgcaatgaagaactttggttatgcaaagaaaatccttggcatgagaattacttgtgagttgtgaca 426  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33919297 ttgttcttgtcttgcaagatttaagcaagtcttttgcaatgaagaactttggttatgcaaagaaaatccttggcatgagaattacttgtgagttgtgaca 33919198  T
Q  427 atatgaatggtaaaattgtggttgtctcaacgaaattacattgagaaggtgttatggactttacatgagaaaatacaaatgtatcagtactctactctat 526  Q
    |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33919197 atatgaatggtaaa-ttgtggttgtctcaacgcaattacattgagaaggtgttatggactttacatgagaaaatacaaatgtatcagtactctactctat 33919099  T
Q  527 agtcatttcaaattgagttcagaataatgccctacaagtgaaaagatcaagaagatatagagatggttccatatgcatccacaaagatagctttgtgtat 626  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||    
T  33919098 agtcatttcaaattgagttcagaataatgccctacaagtgaaaagatcaagaagatatagagatggttccatatgcatccac-aagatagttttgtgtat 33919000  T
Q  627 gttaaggcatgcacaaggccgtatattgctcatatt 662  Q
    ||||||||||||||||||||||||||||||||||||    
T  33918999 gttaaggcatgcacaaggccgtatattgctcatatt 33918964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 23 - 135
Target Start/End: Original strand, 29255352 - 29255464
Alignment:
Q  23 gtcacatgattaacatttaaaactatcattcaagccgttagattaaaatacaatgaaaggttgtgatttagagtaagtctaaaaacttactcttggagtt 122  Q
    |||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | ||||||||| |||||||||||| ||||     
T  29255352 gtcatatgattaacatttaaaactatcattcaagccattagattaaaatacaatgaaaggttgtgatttggtgtaagtctagaaacttactcttagagtc 29255451  T
Q  123 aatatatccctcc 135  Q
    |||||||||||||    
T  29255452 aatatatccctcc 29255464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 23 - 129
Target Start/End: Complemental strand, 29254763 - 29254657
Alignment:
Q  23 gtcacatgattaacatttaaaactatcattcaagccgttagattaaaatacaatgaaaggttgtgatttagagtaagtctaaaaacttactcttggagtt 122  Q
    ||||||||||||||| |||| ||||||||||||||||||||||||||||| ||||||||||| |||||| ||||||||||| ||||||||||||||||||    
T  29254763 gtcacatgattaacaattaagactatcattcaagccgttagattaaaatataatgaaaggttatgatttggagtaagtctacaaacttactcttggagtt 29254664  T
Q  123 aatatat 129  Q
    || ||||    
T  29254663 aaaatat 29254657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 23 - 112
Target Start/End: Original strand, 9981416 - 9981505
Alignment:
Q  23 gtcacatgattaacatttaaaactatcattcaagccgttagattaaaatacaatgaaaggttgtgatttagagtaagtctaaaaacttac 112  Q
    |||||||| ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||    
T  9981416 gtcacatgtttaacatttaaaattatcattcaagtcgttagattaaaatacaatgaaaggttgtgatttggagtaagtctacaaacttac 9981505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 23 - 98
Target Start/End: Complemental strand, 13263849 - 13263774
Alignment:
Q  23 gtcacatgattaacatttaaaactatcattcaagccgttagattaaaatacaatgaaaggttgtgatttagagtaa 98  Q
    ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||    
T  13263849 gtcacatgattaacatttaaaactatcattcgaaccgttagattaaaatacaatgaaaggttgtgatttggagtaa 13263774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 23 - 135
Target Start/End: Complemental strand, 6631428 - 6631316
Alignment:
Q  23 gtcacatgattaacatttaaaactatcattcaagccgttagattaaaatacaatgaaaggttgtgatttagagtaagtctaaaaacttactcttggagtt 122  Q
    ||||||||||||||| ||||||||  |||| ||||| |||||||||||||  ||||||||| | ||||| ||||||||||| |||||||| ||||||||     
T  6631428 gtcacatgattaacaattaaaactcacatttaagccattagattaaaataagatgaaaggtggagatttggagtaagtctataaacttacccttggagtc 6631329  T
Q  123 aatatatccctcc 135  Q
    || ||||||||||    
T  6631328 aaaatatccctcc 6631316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 23 - 135
Target Start/End: Original strand, 17238415 - 17238527
Alignment:
Q  23 gtcacatgattaacatttaaaactatcattcaagccgttagattaaaatacaatgaaaggttgtgatttagagtaagtctaaaaacttactcttggagtt 122  Q
    ||||||||||||||| ||||||||  |||| || || |||||||||||||  ||||||||| | ||||| ||||||||||| |||||||||||||||||     
T  17238415 gtcacatgattaacaattaaaactcacatttaaaccattagattaaaataagatgaaaggtggagatttggagtaagtctataaacttactcttggagtc 17238514  T
Q  123 aatatatccctcc 135  Q
    || ||||||||||    
T  17238515 aaaatatccctcc 17238527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 23 - 135
Target Start/End: Original strand, 6632024 - 6632136
Alignment:
Q  23 gtcacatgattaacatttaaaactatcattcaagccgttagattaaaatacaatgaaaggttgtgatttagagtaagtctaaaaacttactcttggagtt 122  Q
    ||||||||||||||| ||||||||  |||| || || |||||||||||||  ||||||||| | ||||| ||||||||||| |||||||||||||||||     
T  6632024 gtcacatgattaacaattaaaactcacatttaaaccattagattaaaataagatgaaaggtggagatttggagtaagtctataaacttactcttggagtc 6632123  T
Q  123 aatatatccctcc 135  Q
     | ||||||||||    
T  6632124 taaatatccctcc 6632136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 23 - 135
Target Start/End: Complemental strand, 17237817 - 17237705
Alignment:
Q  23 gtcacatgattaacatttaaaactatcattcaagccgttagattaaaatacaatgaaaggttgtgatttagagtaagtctaaaaacttactcttggagtt 122  Q
    ||||||||||||||| ||||||||  |||| || || |||||||||||||  ||||||||| |  |||| ||||||||||| ||||||||||||| |||     
T  17237817 gtcacatgattaacaattaaaactcacatttaaaccattagattaaaataagatgaaaggtggatatttggagtaagtctataaacttactcttgcagtc 17237718  T
Q  123 aatatatccctcc 135  Q
    || ||||||||||    
T  17237717 aaaatatccctcc 17237705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 67
Target Start/End: Original strand, 13264428 - 13264472
Alignment:
Q  23 gtcacatgattaacatttaaaactatcattcaagccgttagatta 67  Q
    ||||||||||||||| |||| ||||||||||||||||||||||||    
T  13264428 gtcacatgattaacaattaagactatcattcaagccgttagatta 13264472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 138
Target Start/End: Complemental strand, 19990324 - 19990273
Alignment:
Q  87 gatttagagtaagtctaaaaacttactcttggagttaatatatccctcccct 138  Q
    ||||| ||||||||||  | ||||||||||||||| ||||||||||||||||    
T  19990324 gatttggagtaagtctttagacttactcttggagtcaatatatccctcccct 19990273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 138
Target Start/End: Complemental strand, 47967043 - 47966992
Alignment:
Q  87 gatttagagtaagtctaaaaacttactcttggagttaatatatccctcccct 138  Q
    ||||| |||||| | |||| ||||||||||||||| ||||||||||||||||    
T  47967043 gatttggagtaactttaaacacttactcttggagtcaatatatccctcccct 47966992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 87; Significance: 2e-41; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 23 - 137
Target Start/End: Complemental strand, 30617506 - 30617392
Alignment:
Q  23 gtcacatgattaacatttaaaactatcattcaagccgttagattaaaatacaatgaaaggttgtgatttagagtaagtctaaaaacttactcttggagtt 122  Q
    |||||||| |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || ||||     
T  30617506 gtcacatggttaatatttaaaactatcattcaagctgttagattaaaatacaatgaaaggttgtgatttagagtaagtctagaaacttactttttgagtc 30617407  T
Q  123 aatatatccctcccc 137  Q
    |||||||||||||||    
T  30617406 aatatatccctcccc 30617392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 23 - 135
Target Start/End: Complemental strand, 41320121 - 41320009
Alignment:
Q  23 gtcacatgattaacatttaaaactatcattcaagccgttagattaaaatacaatgaaaggttgtgatttagagtaagtctaaaaacttactcttggagtt 122  Q
    ||||||||||||||| ||||||||  |||| ||||| |||||||||||||  ||||||||| | ||||| ||||||||||| |||||||||||||||||     
T  41320121 gtcacatgattaacaattaaaactcacatttaagccattagattaaaataagatgaaaggtggagatttggagtaagtctataaacttactcttggagtc 41320022  T
Q  123 aatatatccctcc 135  Q
    || ||||||||||    
T  41320021 aaaatatccctcc 41320009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 23 - 131
Target Start/End: Original strand, 13545306 - 13545414
Alignment:
Q  23 gtcacatgattaacatttaaaactatcattcaagccgttagattaaaatacaatgaaaggttgtgatttagagtaagtctaaaaacttactcttggagtt 122  Q
    |||| |||||||||| |||||||   |||| ||||| |||||||||||||  ||||||||| | ||||| ||||||||||| |||||||||||||||||     
T  13545306 gtcatatgattaacaattaaaacccacatttaagccattagattaaaataagatgaaaggtggagatttggagtaagtctataaacttactcttggagtc 13545405  T
Q  123 aatatatcc 131  Q
    || ||||||    
T  13545406 aaaatatcc 13545414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 23 - 135
Target Start/End: Complemental strand, 13544710 - 13544598
Alignment:
Q  23 gtcacatgattaacatttaaaactatcattcaagccgttagattaaaatacaatgaaaggttgtgatttagagtaagtctaaaaacttactcttggagtt 122  Q
    ||||||||||||||| ||||||||  |||| || |  |||||||||||||  ||||||||| | ||||| || |||||||| ||||||||||||| |||     
T  13544710 gtcacatgattaacaattaaaactcacatttaaactattagattaaaataagatgaaaggtggagatttggaataagtctataaacttactcttgaagtc 13544611  T
Q  123 aatatatccctcc 135  Q
    || ||||||||||    
T  13544610 aaaatatccctcc 13544598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 27 - 135
Target Start/End: Original strand, 41320723 - 41320831
Alignment:
Q  27 catgattaacatttaaaactatcattcaagccgttagattaaaatacaatgaaaggttgtgatttagagtaagtctaaaaacttactcttggagttaata 126  Q
    ||||||||||| |||||| |  |||| || || |||||||||||||  ||||||||| | ||||| ||||||||||| ||||||||| ||||||| || |    
T  41320723 catgattaacaattaaaattcacatttaaaccattagattaaaataagatgaaaggtggagatttggagtaagtctataaacttactattggagtcaaaa 41320822  T
Q  127 tatccctcc 135  Q
    |||| ||||    
T  41320823 tatctctcc 41320831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 127
Target Start/End: Complemental strand, 11169347 - 11169280
Alignment:
Q  60 ttagattaaaatacaatgaaaggttgtgatttagagtaagtctaaaaacttactcttggagttaatat 127  Q
    ||||||||||||   ||||||||| | |||||||||||| |||| ||||||| ||||||||| |||||    
T  11169347 ttagattaaaatgagatgaaaggtggagatttagagtaaatctataaacttattcttggagtcaatat 11169280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 61 - 141
Target Start/End: Original strand, 8143321 - 8143402
Alignment:
Q  61 tagattaaaatacaatgaaaggttgtgatttagagtaagtctaaaaacttactc-ttggagttaatatatccctcccctttt 141  Q
    |||||||||| | |||||| || |||||||| |||||| || ||| | |||||| ||||||| || ||||||||||||||||    
T  8143321 tagattaaaacataatgaagggatgtgatttggagtaactcaaaagagttactccttggagtcaaaatatccctcccctttt 8143402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 58 - 135
Target Start/End: Original strand, 15555016 - 15555093
Alignment:
Q  58 cgttagattaaaatacaatgaaaggttgtgatttagagtaagtctaaaaacttactcttggagttaatatatccctcc 135  Q
    |||| |||||||||| |||| | || |||||||| |||||| |  ||| | |||||||||||||||| ||||||||||    
T  15555016 cgttggattaaaataaaatggagggatgtgatttggagtaacttaaaagagttactcttggagttaaaatatccctcc 15555093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 87 - 135
Target Start/End: Complemental strand, 24983173 - 24983125
Alignment:
Q  87 gatttagagtaagtctaaaaacttactcttggagttaatatatccctcc 135  Q
    |||||||||||| | |||| |||||||||||||||  ||||||||||||    
T  24983173 gatttagagtaactttaaagacttactcttggagtcgatatatccctcc 24983125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 78; Significance: 5e-36; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 23 - 140
Target Start/End: Original strand, 32527487 - 32527604
Alignment:
Q  23 gtcacatgattaacatttaaaactatcattcaagccgttagattaaaatacaatgaaaggttgtgatttagagtaagtctaaaaacttactcttggagtt 122  Q
    ||||||||||||||| |||| |||||||||||||| |||||||||||||| |||||||||||||||||| ||||||||||| |||||||||||| ||||     
T  32527487 gtcacatgattaacaattaagactatcattcaagctgttagattaaaatataatgaaaggttgtgatttggagtaagtctacaaacttactcttagagtc 32527586  T
Q  123 aatatatccctccccttt 140  Q
    || ||||| |||||||||    
T  32527587 aaaatatctctccccttt 32527604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 23 - 91
Target Start/End: Complemental strand, 32526901 - 32526833
Alignment:
Q  23 gtcacatgattaacatttaaaactatcattcaagccgttagattaaaatacaatgaaaggttgtgattt 91  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32526901 gtcacatgattaacatttaaaactatcattcaagccgttagattaaaatacaatgaaaggttgtgattt 32526833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 93 - 139
Target Start/End: Original strand, 27110485 - 27110531
Alignment:
Q  93 gagtaagtctaaaaacttactcttggagttaatatatccctcccctt 139  Q
    |||||| | |||| ||||||||||||||| |||||||||||||||||    
T  27110485 gagtaactttaaacacttactcttggagtcaatatatccctcccctt 27110531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 2e-23; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 23 - 135
Target Start/End: Complemental strand, 52362752 - 52362640
Alignment:
Q  23 gtcacatgattaacatttaaaactatcattcaagccgttagattaaaatacaatgaaaggttgtgatttagagtaagtctaaaaacttactcttggagtt 122  Q
    ||||||||||||||| ||||||||  |||| ||||| |||||||||||||  ||||||||| | ||||| ||||| ||||| |||||||||||||||||     
T  52362752 gtcacatgattaacaattaaaactcacatttaagccattagattaaaataagatgaaaggtggagatttggagtaggtctataaacttactcttggagtc 52362653  T
Q  123 aatatatccctcc 135  Q
    || ||||||||||    
T  52362652 aaaatatccctcc 52362640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 31 - 135
Target Start/End: Original strand, 16674246 - 16674350
Alignment:
Q  31 attaacatttaaaactatcattcaagccgttagattaaaatacaatgaaaggttgtgatttagagtaagtctaaaaacttactcttggagttaatatatc 130  Q
    ||||||| ||||||||  |||| ||||| |||||||||||||  |||||||||   ||||| ||||||||||| |||||||||||| |||| || |||||    
T  16674246 attaacaattaaaactcacatttaagccattagattaaaataagatgaaaggtgtagatttggagtaagtctataaacttactctttgagtcaaaatatc 16674345  T
Q  131 cctcc 135  Q
     ||||    
T  16674346 tctcc 16674350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 110
Target Start/End: Complemental strand, 16673642 - 16673555
Alignment:
Q  23 gtcacatgattaacatttaaaactatcattcaagccgttagattaaaatacaatgaaaggttgtgatttagagtaagtctaaaaactt 110  Q
    ||||||||||||||| |||||| |  |||| || || |||||||||||||  ||||||||| |  |||| ||||||||||| ||||||    
T  16673642 gtcacatgattaacaattaaaattcacatttaaaccattagattaaaataagatgaaaggtggatattttgagtaagtctataaactt 16673555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 75 - 139
Target Start/End: Complemental strand, 48207659 - 48207595
Alignment:
Q  75 atgaaaggttgtgatttagagtaagtctaaaaacttactcttggagttaatatatccctcccctt 139  Q
    ||||||||||  ||||| || |||||||  | ||||| ||||||||| |||||||||||||||||    
T  48207659 atgaaaggtttagatttggaataagtctttagacttattcttggagtcaatatatccctcccctt 48207595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 3e-16; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 23 - 139
Target Start/End: Complemental strand, 41516572 - 41516456
Alignment:
Q  23 gtcacatgattaacatttaaaactatcattcaagccgttagattaaaatacaatgaaaggttgtgatttagagtaagtctaaaaacttactcttggagtt 122  Q
    ||||||||||||||| ||||||||  |||| || |  |||||||||||||  ||||||||| | ||||| ||||||||||| |||  ||||||| ||||     
T  41516572 gtcacatgattaacaattaaaactcacatttaaactattagattaaaataagatgaaaggtggagatttggagtaagtctataaatatactcttagagtc 41516473  T
Q  123 aatatatccctcccctt 139  Q
    || ||||||||||||||    
T  41516472 aaaatatccctcccctt 41516456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 87 - 135
Target Start/End: Original strand, 8469813 - 8469861
Alignment:
Q  87 gatttagagtaagtctaaaaacttactcttggagttaatatatccctcc 135  Q
    ||||||||||||||||| ||| ||||||||||||| || ||||||||||    
T  8469813 gatttagagtaagtctataaatttactcttggagtcaaaatatccctcc 8469861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 72
Target Start/End: Original strand, 41517172 - 41517221
Alignment:
Q  23 gtcacatgattaacatttaaaactatcattcaagccgttagattaaaata 72  Q
    ||||||||||||||| ||||||||  |||| ||||| |||||||||||||    
T  41517172 gtcacatgattaacaattaaaactcacatttaagccattagattaaaata 41517221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 26 - 118
Target Start/End: Complemental strand, 14125257 - 14125165
Alignment:
Q  26 acatgattaacatttaaaactatcattcaagccgttagattaaaatacaatgaaaggttgtgatttagagtaagtctaaaaacttactcttgg 118  Q
    |||| ||||||| |||||||||    ||||||||||| ||||||||| |||||||||| | ||||| ||||||||||| ||||||||| ||||    
T  14125257 acattattaacaattaaaactaatgatcaagccgttaaattaaaataaaatgaaaggtagcgatttggagtaagtctataaacttacttttgg 14125165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 93 - 139
Target Start/End: Complemental strand, 2479338 - 2479292
Alignment:
Q  93 gagtaagtctaaaaacttactcttggagttaatatatccctcccctt 139  Q
    |||||| | |||| ||||||||||||||| |||||||||||||||||    
T  2479338 gagtaactttaaacacttactcttggagtcaatatatccctcccctt 2479292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 109 - 141
Target Start/End: Complemental strand, 29525133 - 29525101
Alignment:
Q  109 ttactcttggagttaatatatccctcccctttt 141  Q
    ||||||||||||| |||||||||||||||||||    
T  29525133 ttactcttggagtcaatatatccctcccctttt 29525101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University