View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1936_high_8 (Length: 471)
Name: NF1936_high_8
Description: NF1936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1936_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 341; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 99 - 463
Target Start/End: Complemental strand, 38860265 - 38859901
Alignment:
| Q |
99 |
gattagaaaccagaatgctttttctcgctcttcattttactgtattttcagaaaacacaaggtggtgttctttttatgactttaggctaggcttacacga |
198 |
Q |
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| T |
38860265 |
gattagaaaccagaatactttttttctctcttcattttactgttttttcagaaaacacaaggtggtgttctttttattactttaggctaggcttacacga |
38860166 |
T |
|
| Q |
199 |
gttaatatgcagaccatgacacgtgtttgtctgtttataacttatctctttacaaaaagtttaaattctttcagacaggtctttaaatattgggtcttgc |
298 |
Q |
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| T |
38860165 |
gttaatatgcagaccatgacacgtgtttgtctgtttataacttttctctttacaaaaagtttaaattctttcagacaggtctttaaatattgggtcttgc |
38860066 |
T |
|
| Q |
299 |
taaagactagtaaggattcatccaataaatttggcacttaatactgccaaaggataattgacctaaatgcagtaaaaaacatttaggatccaagttagtt |
398 |
Q |
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| T |
38860065 |
taaagactagtaaggattcatccaataaatttggcacttaatactgccaaaggataattgacctaaatgcagtaaaaaacatttaggatccaagttagtt |
38859966 |
T |
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| Q |
399 |
ttctactcaagtaaacaacacatcatgtgtgtgcacctacttttcatcttaacatgtattttctt |
463 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38859965 |
ttctactcaagtaaacaacacatcatgtgtgtgcacctacttttcatcttaacatgtattttctt |
38859901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 51
Target Start/End: Complemental strand, 38860294 - 38860263
Alignment:
| Q |
20 |
aattcaaaaccagcaaactaacttaaaacgat |
51 |
Q |
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| T |
38860294 |
aattcaaaaccagcaaactaacttaaaacgat |
38860263 |
T |
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