View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1936_high_9 (Length: 464)
Name: NF1936_high_9
Description: NF1936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1936_high_9 |
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Alignment Details
Target: chr8 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 178 - 453
Target Start/End: Complemental strand, 36829725 - 36829456
Alignment:
| Q |
178 |
tcgtgtgtatgttgaattgtaaaatattgaccaccaaaccgaggttgataccaaaaataatatagtcttgctcatcaccgcacacacatttgttgctctt |
277 |
Q |
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| T |
36829725 |
tcgtgtgtatgttgaattgtaaaatattgaccaccgaaccgaggttgataccaaaaataatatagtcttgctcatcaccgcacacacatttgttgctctt |
36829626 |
T |
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| Q |
278 |
gagagattgccgataaaattgacccagtgacaaattttataatacattacttactttcttcgtacattattttggcatctctttttatatatgttaatgt |
377 |
Q |
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| T |
36829625 |
gagagattgccgataaaattgacccagtgacaaattttataatacattacttactttcttcatacattattttggcatctcattttatat------atgt |
36829532 |
T |
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| Q |
378 |
catatgttatgttgcttcctttactctccgatgtgggaatcctattcctacgagtttggactcttctagtgttcat |
453 |
Q |
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| T |
36829531 |
catatgttatgttgcttcctttactctccgatgtgggattcctattcctacgagtttggactcttctagtgttcat |
36829456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 117 - 161
Target Start/End: Complemental strand, 36829785 - 36829738
Alignment:
| Q |
117 |
gtcccttaaaaaaattaattaag---tatagtgaagtaatgatccttc |
161 |
Q |
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| T |
36829785 |
gtcccttaaaaaaattaattaagtattatagtgaagtgatgatccttc |
36829738 |
T |
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