View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1936_low_12 (Length: 446)
Name: NF1936_low_12
Description: NF1936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1936_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 183; Significance: 8e-99; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 183; E-Value: 8e-99
Query Start/End: Original strand, 14 - 226
Target Start/End: Original strand, 41853287 - 41853496
Alignment:
| Q |
14 |
agagtattaaagtattacaagattgtcaaagttgctgttaaaaataaatttaaattcactaactcataattgaattctcaacccttttgttttataccca |
113 |
Q |
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| T |
41853287 |
agagtattaaagtattagaagattgtcaaagttgctgttaaaaataaatttaaattcactaactcataattgaattctcaacccttttgttttatactca |
41853386 |
T |
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| Q |
114 |
ttagatattttataacccctaaatgtaacatgatattatgatcgctttggaggccattgagatatggactggttgttgattcaatttgtggtatgagatt |
213 |
Q |
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| T |
41853387 |
ttagatattttataacccctaaatgtaacatgatattatgatcactttggaagccattgagatatggactggttgttgattcaatttgtggt---agatt |
41853483 |
T |
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| Q |
214 |
ctcgaataactat |
226 |
Q |
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| T |
41853484 |
ctcgaataactat |
41853496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 334 - 431
Target Start/End: Original strand, 41859198 - 41859298
Alignment:
| Q |
334 |
tgaaaccgtaagtagtgaaccactttccttctccaagctaata---tcaaatatcatttataaattcatatcaatgccttgcaaatataacacaagcttc |
430 |
Q |
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| T |
41859198 |
tgaaaccgtaagtagtgaaccactttccttctccaagctaatactatcaaatatcatttacaaattcatatcaataccttccaaatataacacaagcttc |
41859297 |
T |
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| Q |
431 |
t |
431 |
Q |
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| T |
41859298 |
t |
41859298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 221 - 306
Target Start/End: Original strand, 41859103 - 41859198
Alignment:
| Q |
221 |
aactatctcgaaactgagctgacagtacaactcttcaaaccagaatgc----------atcgagtgaatgtgtgcaaaacaatgttaagtcaaagt |
306 |
Q |
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| T |
41859103 |
aactatctcgaaactgagctgacagtacaactcttcaaaccagaatgcattgatatgaatcgagtgaatgtgtgcaaaacaatgttaagtcaaagt |
41859198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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