View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1936_low_15 (Length: 368)
Name: NF1936_low_15
Description: NF1936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1936_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 18 - 329
Target Start/End: Original strand, 15972115 - 15972441
Alignment:
| Q |
18 |
attttcacccttaaatagaaggacctatatgggtccaaagtccagacttgcgtttaagaacatggattggaggttagaaatgtacaatacttcctaaatt |
117 |
Q |
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| T |
15972115 |
attttcacccttaaataggaggacctatatgggtccaaagtcctgacttgcgtttaagaacatggattggaggttagaaatgtacaatacttcctaaatt |
15972214 |
T |
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| Q |
118 |
gaagtttgctgcgctgtaattaatacttccattattgtcaatcatatataccacatgaaggagtattccttctccaaccactgttcttatggatttcaat |
217 |
Q |
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| T |
15972215 |
gaagtttgctgcactgtaattaatacttccattattgtcaatcatatataccacatgaaggagtattccttctccaaccactgttcttatggatttcaat |
15972314 |
T |
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| Q |
218 |
gacaatgt---------------ggtggggtggggagtgagtaaagatcttctccattgatcaaattaaatgaggtatgcaatttgaagagtgataaata |
302 |
Q |
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| T |
15972315 |
gacaatgtggtgtggtggggtggggtggggtggggagtgagtaaggatcttctccattgatcaaattaaatgaggtatacaatttgaagagtgataaata |
15972414 |
T |
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| Q |
303 |
caaaaaagaaaatagatagtggaaaat |
329 |
Q |
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| T |
15972415 |
caaaaaagaaaatagatagtggaaaat |
15972441 |
T |
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Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 242 - 309
Target Start/End: Original strand, 36003204 - 36003271
Alignment:
| Q |
242 |
agtaaagatcttctccattgatcaaattaaatgaggtatgcaatttgaagagtgataaatacaaaaaa |
309 |
Q |
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| T |
36003204 |
agtaaagatctacttcatttgtcaaaataaatgaagtatgcaatttggagagagataaatacaaaaaa |
36003271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 310
Target Start/End: Original strand, 47296095 - 47296165
Alignment:
| Q |
240 |
tgagtaaagatcttctccattgatcaaattaaatgaggtatgcaatttgaagagtgataaatacaaaaaag |
310 |
Q |
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| T |
47296095 |
tgagtaaagatcatctccatttattaaattaaatgaagtatacaatttggagagagatggacacaaaaaag |
47296165 |
T |
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