View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1936_low_16 (Length: 364)

Name: NF1936_low_16
Description: NF1936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1936_low_16
NF1936_low_16
[»] chr4 (21 HSPs)
chr4 (201-361)||(54918929-54919091)
chr4 (38-150)||(54919113-54919225)
chr4 (216-338)||(10065070-10065196)
chr4 (213-301)||(20783696-20783784)
chr4 (217-344)||(20291780-20291911)
chr4 (213-340)||(38562128-38562259)
chr4 (27-148)||(54922025-54922147)
chr4 (213-266)||(20291789-20291842)
chr4 (213-266)||(23673436-23673489)
chr4 (9-46)||(54921451-54921488)
chr4 (216-300)||(6371925-6372009)
chr4 (253-305)||(17236164-17236216)
chr4 (217-307)||(52378713-52378803)
chr4 (213-266)||(7277496-7277549)
chr4 (212-261)||(30920794-30920843)
chr4 (213-266)||(44626477-44626530)
chr4 (216-336)||(23673367-23673490)
chr4 (237-307)||(44626428-44626498)
chr4 (213-266)||(52840275-52840328)
chr4 (312-340)||(2181573-2181601)
chr4 (213-265)||(39993123-39993175)
[»] chr1 (17 HSPs)
chr1 (201-340)||(8900796-8900939)
chr1 (214-340)||(41944772-41944902)
chr1 (213-338)||(35489201-35489330)
chr1 (217-335)||(5368782-5368903)
chr1 (201-300)||(37247618-37247717)
chr1 (217-336)||(5700043-5700168)
chr1 (237-337)||(49166639-49166743)
chr1 (213-264)||(51171338-51171389)
chr1 (213-265)||(882933-882985)
chr1 (213-265)||(4604919-4604971)
chr1 (213-338)||(24419540-24419669)
chr1 (213-300)||(5346969-5347056)
chr1 (207-265)||(21945059-21945117)
chr1 (213-262)||(5700118-5700167)
chr1 (213-266)||(8900801-8900854)
chr1 (235-300)||(11900874-11900939)
chr1 (213-266)||(24419613-24419666)
[»] chr7 (7 HSPs)
chr7 (217-338)||(2399704-2399829)
chr7 (213-338)||(34670357-34670485)
chr7 (215-300)||(23097511-23097595)
chr7 (213-264)||(3094417-3094468)
chr7 (217-265)||(2635678-2635726)
chr7 (248-300)||(15996162-15996214)
chr7 (213-268)||(45444725-45444781)
[»] chr2 (9 HSPs)
chr2 (213-308)||(43445068-43445163)
chr2 (213-338)||(41517368-41517497)
chr2 (213-299)||(27279494-27279580)
chr2 (217-269)||(41221706-41221758)
chr2 (248-307)||(33956328-33956387)
chr2 (213-266)||(29168580-29168633)
chr2 (213-266)||(33956366-33956419)
chr2 (213-265)||(472419-472471)
chr2 (213-338)||(29168507-29168636)
[»] chr6 (9 HSPs)
chr6 (213-306)||(9910535-9910628)
chr6 (213-300)||(26296255-26296342)
chr6 (217-300)||(862833-862916)
chr6 (213-300)||(16260669-16260756)
chr6 (217-281)||(24252896-24252961)
chr6 (215-311)||(31159086-31159182)
chr6 (213-295)||(5069947-5070029)
chr6 (237-266)||(31159157-31159186)
chr6 (213-265)||(3846438-3846490)
[»] scaffold0514 (1 HSPs)
scaffold0514 (213-301)||(5827-5915)
[»] chr8 (12 HSPs)
chr8 (213-335)||(6590790-6590916)
chr8 (217-301)||(14113258-14113342)
chr8 (217-301)||(6649118-6649202)
chr8 (213-301)||(44329164-44329252)
chr8 (217-337)||(30542473-30542596)
chr8 (213-300)||(30358623-30358713)
chr8 (213-300)||(1784096-1784183)
chr8 (230-300)||(24185578-24185648)
chr8 (213-265)||(2602060-2602112)
chr8 (213-266)||(6616590-6616643)
chr8 (213-266)||(27988086-27988139)
chr8 (213-266)||(28045388-28045441)
[»] chr5 (12 HSPs)
chr5 (215-307)||(30046346-30046438)
chr5 (213-311)||(14509856-14509954)
chr5 (213-307)||(28499789-28499883)
chr5 (213-300)||(8355556-8355643)
chr5 (229-338)||(14751148-14751261)
chr5 (213-294)||(11089345-11089426)
chr5 (213-266)||(18200668-18200721)
chr5 (213-301)||(8567921-8568009)
chr5 (220-304)||(19522560-19522644)
chr5 (213-265)||(28499863-28499914)
chr5 (217-269)||(35463964-35464016)
chr5 (213-265)||(43221642-43221694)
[»] chr3 (7 HSPs)
chr3 (213-340)||(16867625-16867756)
chr3 (213-344)||(29212850-29212985)
chr3 (213-340)||(18093785-18093916)
chr3 (227-333)||(10937919-10938028)
chr3 (213-266)||(30122035-30122088)
chr3 (213-265)||(25108987-25109039)
chr3 (214-291)||(27696621-27696698)
[»] scaffold0470 (1 HSPs)
scaffold0470 (213-266)||(5876-5929)


Alignment Details
Target: chr4 (Bit Score: 115; Significance: 2e-58; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 201 - 361
Target Start/End: Complemental strand, 54919091 - 54918929
Alignment:
Q  201 tattctctttgttcacatttataagtaaaaaa-tgactttttaagtatattgaataactaatgtatccggccacgtttataggttaaatacattaattat 299  Q
    ||||||||| |||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| ||||||||||||||| |||||||||||||    
T  54919091 tattctcttcgttcacatttataagtaaaaaaatgactttttaagtacattgaataactaatgtatccggtcacgtttataggttagatacattaattat 54918992  T
Q  300 tgaatatacttagttgtt-ttttgtttataaatgtgaccgaaatgaatatgaaacgattaacc 361  Q
    ||||| |||||||||||| ||||| |||||||||||||||||| || ||||||||||||||||    
T  54918991 tgaatgtacttagttgtttttttgcttataaatgtgaccgaaaggagtatgaaacgattaacc 54918929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 38 - 150
Target Start/End: Complemental strand, 54919225 - 54919113
Alignment:
Q  38 cattaaagatcgaatgcacataaaagtggtttatggaggttttgtaatgtatgcatgcttacatagacatgtgtaattaatgaattaacattgaaaaatg 137  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54919225 cattaaagatcgaatgcacataaaagtggtttatggaggttttgtaacgtatgcatgcttacatagacatgtgtaattaatgaattaacattgaaaaatg 54919126  T
Q  138 gtagcagtctatt 150  Q
    |||||||||||||    
T  54919125 gtagcagtctatt 54919113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 216 - 338
Target Start/End: Complemental strand, 10065196 - 10065070
Alignment:
Q  216 catttataagtaaaaaatgactttttaagtatattgaataactaatgtatccggccacgtttataggttaaatacattaattattgaatatactt----a 311  Q
    |||||||||| |||||||||||||||| ||| ||||||||| ||||||||||| |||  |||||  |||| ||||||||||||||| || ||| |    |    
T  10065196 catttataagcaaaaaatgactttttaggtacattgaataattaatgtatccgaccatatttatgagttagatacattaattattggatgtacctaaaaa 10065097  T
Q  312 gttgttttttgtttataaatgtgaccg 338  Q
    ||||||||||| |||||||||||||||    
T  10065096 gttgttttttgcttataaatgtgaccg 10065070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 213 - 301
Target Start/End: Original strand, 20783696 - 20783784
Alignment:
Q  213 tcacatttataagtaaaaaatgactttttaagtatattgaataactaatgtatccggccacgtttataggttaaatacattaattattg 301  Q
    |||||||||||| ||||||||||||||||||||| ||||||||| ||||||||| |  ||| |||||   |||||||||||||||||||    
T  20783696 tcacatttataaataaaaaatgactttttaagtacattgaataattaatgtatctgatcacatttatgtattaaatacattaattattg 20783784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 217 - 344
Target Start/End: Complemental strand, 20291911 - 20291780
Alignment:
Q  217 atttataagtaaaaaatgactttttaagtatattgaataactaatgtatccggccacgtttataggttaaatacattaattattgaatatactt----ag 312  Q
    ||||||||| ||||||| ||||||||  | ||||||||||||||||||||| | |    |||||| | | |||||||| ||||| |||||||||    ||    
T  20291911 atttataagcaaaaaataactttttagatttattgaataactaatgtatccagtcgtaattatagatcagatacattagttatttaatatacttaaaaag 20291812  T
Q  313 ttgttttttgtttataaatgtgaccgaaatga 344  Q
    |||||||||| ||||||||||||| |||||||    
T  20291811 ttgttttttgcttataaatgtgactgaaatga 20291780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 213 - 340
Target Start/End: Complemental strand, 38562259 - 38562128
Alignment:
Q  213 tcacatttataagtaaaaaatgactttttaagtatattgaataactaatgtatccggccacgtttataggttaaatacattaattattgaatatactt-- 310  Q
    ||||||||||||| ||||||  | ||||||  || ||||||||| |||||||||||| ||| ||||||||  | |||||||||||||| ||| ||  |      
T  38562259 tcacatttataagcaaaaaacaattttttagatacattgaataattaatgtatccggtcacatttataggacatatacattaattattcaatgtatctaa 38562160  T
Q  311 --agttgttttttgtttataaatgtgaccgaa 340  Q
      |||||||||||| |||||||||||||||||    
T  38562159 caagttgttttttgcttataaatgtgaccgaa 38562128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 27 - 148
Target Start/End: Complemental strand, 54922147 - 54922025
Alignment:
Q  27 ttggaaaatggcattaaagatcgaatgcacataaaagtggttta-tggaggttttgtaatgtatgcatgcttacatagacatgtgtaattaatgaattaa 125  Q
    |||||||||| |||||| ||| |||||  || | ||||| |||  |||| |||||||||||| |||||||||| ||||||||||||| |||||||||||     
T  54922147 ttggaaaatgacattaaggattgaatgtgcagagaagtgattttgtggacgttttgtaatgtctgcatgcttagatagacatgtgtagttaatgaattag 54922048  T
Q  126 cattgaaaaatggtagcagtcta 148  Q
    ||| | |||||| ||| ||||||    
T  54922047 catcggaaaatgatagtagtcta 54922025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 213 - 266
Target Start/End: Original strand, 20291789 - 20291842
Alignment:
Q  213 tcacatttataagtaaaaaatgactttttaagtatattgaataactaatgtatc 266  Q
    ||||||||||||| ||||||  |||||||||||||||| |||||||||||||||    
T  20291789 tcacatttataagcaaaaaacaactttttaagtatattaaataactaatgtatc 20291842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 213 - 266
Target Start/End: Complemental strand, 23673489 - 23673436
Alignment:
Q  213 tcacatttataagtaaaaaatgactttttaagtatattgaataactaatgtatc 266  Q
    ||||||||||||| ||||||| |||||||| ||||||||||||| |||||||||    
T  23673489 tcacatttataagcaaaaaataactttttaggtatattgaataattaatgtatc 23673436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 46
Target Start/End: Complemental strand, 54921488 - 54921451
Alignment:
Q  9 gagatgaaggattaagtcttggaaaatggcattaaaga 46  Q
    ||||||||||||||||||||||||||||||||||||||    
T  54921488 gagatgaaggattaagtcttggaaaatggcattaaaga 54921451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 216 - 300
Target Start/End: Original strand, 6371925 - 6372009
Alignment:
Q  216 catttataagtaaaaaatgactttttaagtatattgaataactaatgtatccggccacgtttataggttaaatacattaattatt 300  Q
    |||||||||| |||||||||||||||| ||| ||||||||| ||||||||  ||  || ||||| ||||| |||||||| |||||    
T  6371925 catttataagcaaaaaatgactttttaggtacattgaataattaatgtatatggttacatttatgggttagatacattagttatt 6372009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 253 - 305
Target Start/End: Original strand, 17236164 - 17236216
Alignment:
Q  253 ataactaatgtatccggccacgtttataggttaaatacattaattattgaata 305  Q
    |||| |||||||||||| ||| |||||||||||||||||||||||||| ||||    
T  17236164 ataattaatgtatccggtcacatttataggttaaatacattaattattcaata 17236216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 217 - 307
Target Start/End: Complemental strand, 52378803 - 52378713
Alignment:
Q  217 atttataagtaaaaaatgactttttaagtatattgaataactaatgtatccggccacgtttataggttaaatacattaattattgaatata 307  Q
    ||||||||| ||||||||||| ||||  |||||||||||| ||||||||  |  ||| |||||  |||| ||||||||||||||| |||||    
T  52378803 atttataagcaaaaaatgactctttagatatattgaataattaatgtatttgatcacatttatgagttagatacattaattattggatata 52378713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 213 - 266
Target Start/End: Complemental strand, 7277549 - 7277496
Alignment:
Q  213 tcacatttataagtaaaaaatgactttttaagtatattgaataactaatgtatc 266  Q
    |||||||||||||  ||||| |||||||||||| |||||||||||| |||||||    
T  7277549 tcacatttataagcgaaaaacgactttttaagtttattgaataactcatgtatc 7277496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 212 - 261
Target Start/End: Complemental strand, 30920843 - 30920794
Alignment:
Q  212 ttcacatttataagtaaaaaatgactttttaagtatattgaataactaat 261  Q
    |||||||||||||| ||||||| | ||||||||| |||||||||||||||    
T  30920843 ttcacatttataagcaaaaaataattttttaagtttattgaataactaat 30920794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 213 - 266
Target Start/End: Complemental strand, 44626530 - 44626477
Alignment:
Q  213 tcacatttataagtaaaaaatgactttttaagtatattgaataactaatgtatc 266  Q
    |||||| |||||| ||||||||||||||||| ||||||||||||  ||||||||    
T  44626530 tcacatatataagcaaaaaatgactttttaaatatattgaataatcaatgtatc 44626477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 216 - 336
Target Start/End: Original strand, 23673367 - 23673490
Alignment:
Q  216 catttataagtaaaaaatgactttttaagtatattgaataactaatgtatccggccacgtttataggttaaatacattaattattgaatatactt----a 311  Q
    |||||||||| ||||||| ||||||||| || || |||||| ||||||||  || ||| | |||| || | |||||||||||||| ||||||| |    |    
T  23673367 catttataagcaaaaaataactttttaa-tacatcgaataattaatgtatttggtcacatatatatgtcagatacattaattattcaatatacctaaaaa 23673465  T
Q  312 gttgttttttgtttataaatgtgac 336  Q
    ||| ||||||| |||||||||||||    
T  23673466 gttattttttgcttataaatgtgac 23673490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 307
Target Start/End: Original strand, 44626428 - 44626498
Alignment:
Q  237 tttttaagtatattgaataactaatgtatccggccacgtttataggttaaatacattaattattgaatata 307  Q
    |||||||||||||||||||| |||| |||  || ||| || |||||||| ||||||| |||||| ||||||    
T  44626428 tttttaagtatattgaataattaatttatgtggtcacattcataggttagatacattgattattcaatata 44626498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 266
Target Start/End: Original strand, 52840275 - 52840328
Alignment:
Q  213 tcacatttataagtaaaaaatgactttttaagtatattgaataactaatgtatc 266  Q
    ||||||||||||| ||||||| | |||||||||| ||| ||||| |||||||||    
T  52840275 tcacatttataagcaaaaaataattttttaagtacattaaataattaatgtatc 52840328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 312 - 340
Target Start/End: Complemental strand, 2181601 - 2181573
Alignment:
Q  312 gttgttttttgtttataaatgtgaccgaa 340  Q
    |||||||||||||||||||||||||||||    
T  2181601 gttgttttttgtttataaatgtgaccgaa 2181573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 265
Target Start/End: Complemental strand, 39993175 - 39993123
Alignment:
Q  213 tcacatttataagtaaaaaatgactttttaagtatattgaataactaatgtat 265  Q
    ||||||||||||||||||||| ||||||||  |  ||||||||| ||||||||    
T  39993175 tcacatttataagtaaaaaataactttttagattcattgaataattaatgtat 39993123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 1e-29; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 201 - 340
Target Start/End: Complemental strand, 8900939 - 8900796
Alignment:
Q  201 tattctctttgttcacatttataagtaaaaaatgactttttaagtatattgaataactaatgtatccggccacgtttataggttaaatacattaattatt 300  Q
    |||||||| || | ||||||||||||||||||| |||||||| ||||||||||||| |||||||||||| ||| ||||||||||| ||||||||||||||    
T  8900939 tattctctctggtaacatttataagtaaaaaattactttttaggtatattgaataattaatgtatccggtcacatttataggttagatacattaattatt 8900840  T
Q  301 gaatatactt----agttgttttttgtttataaatgtgaccgaa 340  Q
     ||| ||| |    |||||||| ||  |||||||||||||||||    
T  8900839 caatgtacctaaaaagttgtttattacttataaatgtgaccgaa 8900796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 214 - 340
Target Start/End: Complemental strand, 41944902 - 41944772
Alignment:
Q  214 cacatttataagtaaaaaatgactttttaagtatattgaataactaatgtatccggccacgtttataggttaaatacattaattattgaatatactt--- 310  Q
    |||||||||||| ||| ||||| |||||||||| | ||||||| ||||||| |||| ||| ||||| ||||| ||||||||||||||| |||||| |       
T  41944902 cacatttataagcaaataatgattttttaagtacaatgaataattaatgtacccggtcacatttatgggttagatacattaattattggatatacctaaa 41944803  T
Q  311 -agttgttttttgtttataaatgtgaccgaa 340  Q
     |||||||||||| |||||||||||||||||    
T  41944802 aagttgttttttgcttataaatgtgaccgaa 41944772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 213 - 338
Target Start/End: Complemental strand, 35489330 - 35489201
Alignment:
Q  213 tcacatttataagtaaaaaatgactttttaagtatattgaataactaatgtatccggccacgtttataggttaaatacattaattattgaatatactt-- 310  Q
    ||||||||||||| |||||||||||||||| ||| ||||||||| ||||| ||| ||  |  ||||||||||| |||||||||||||| ||| ||  |      
T  35489330 tcacatttataagcaaaaaatgactttttatgtacattgaataattaatgaatctggtgatatttataggttagatacattaattattcaatgtatctaa 35489231  T
Q  311 --agttgttttttgtttataaatgtgaccg 338  Q
      |||||||||||| |||||||||||||||    
T  35489230 aaagttgttttttgattataaatgtgaccg 35489201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 217 - 335
Target Start/End: Complemental strand, 5368903 - 5368782
Alignment:
Q  217 atttataagtaaaaaatgactttttaagtatattgaataactaatgtatccggccacgtttataggttaaatacattaattattgaatatactt---agt 313  Q
    ||||||||| ||||| | ||||||||  |  ||||||||| |||||||||||| ||| ||||| ||||| ||||||||||||||| || ||| |   |||    
T  5368903 atttataagcaaaaattaactttttagatgcattgaataattaatgtatccggtcacatttatgggttagatacattaattattggatgtacataaaagt 5368804  T
Q  314 tgttttttgtttataaatgtga 335  Q
    | ||||||| ||||||||||||    
T  5368803 tattttttgcttataaatgtga 5368782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 201 - 300
Target Start/End: Complemental strand, 37247717 - 37247618
Alignment:
Q  201 tattctctttgttcacatttataagtaaaaaatgactttttaagtatattgaataactaatgtatccggccacgtttataggttaaatacattaattatt 300  Q
    |||||| |||| ||||||||||||||||||||| ||||||||| || ||| ||||| |||  ||| | |  || ||||||||||| ||||||||||||||    
T  37247717 tattctttttggtcacatttataagtaaaaaataactttttaaatacatttaataattaacatatacagttacatttataggttagatacattaattatt 37247618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 217 - 336
Target Start/End: Original strand, 5700043 - 5700168
Alignment:
Q  217 atttataagtaaaaaatgactttttaagtata--ttgaataactaatgtatccggccacgtttataggttaaatacattaattattgaatatactt---- 310  Q
    ||||||||| |||||||  |||||||| ||||  |||||||| |||||||||||  ||  ||||||| | |||| ||||||||||| ||| |||||        
T  5700043 atttataagcaaaaaatagctttttaattatatattgaataattaatgtatccgatcatatttatagatcaaatgcattaattattcaatgtacttaaaa 5700142  T
Q  311 agttgttttttgtttataaatgtgac 336  Q
    |||||||||||| |||||||||||||    
T  5700143 agttgttttttgcttataaatgtgac 5700168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 237 - 337
Target Start/End: Original strand, 49166639 - 49166743
Alignment:
Q  237 tttttaagtatattgaataactaatgtatccggccacgtttataggttaaatacattaattattgaatatactt----agttgttttttgtttataaatg 332  Q
    |||||| ||| ||| ||||| |||||||||| | ||| ||||||||||| |||||||||||||| ||| ||  |    |||||||||||| |||||||||    
T  49166639 tttttaggtacattaaataattaatgtatccagtcacatttataggttagatacattaattattcaatgtaactaaaaagttgttttttgcttataaatg 49166738  T
Q  333 tgacc 337  Q
    |||||    
T  49166739 tgacc 49166743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 213 - 264
Target Start/End: Complemental strand, 51171389 - 51171338
Alignment:
Q  213 tcacatttataagtaaaaaatgactttttaagtatattgaataactaatgta 264  Q
    ||||||||||||||||||||| |||||||||||  ||| |||||||||||||    
T  51171389 tcacatttataagtaaaaaataactttttaagttcattaaataactaatgta 51171338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 265
Target Start/End: Original strand, 882933 - 882985
Alignment:
Q  213 tcacatttataagtaaaaaatgactttttaagtatattgaataactaatgtat 265  Q
    |||||||||||||||||| || |||||||| ||  ||||||||||||||||||    
T  882933 tcacatttataagtaaaatataactttttaggttcattgaataactaatgtat 882985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 265
Target Start/End: Complemental strand, 4604971 - 4604919
Alignment:
Q  213 tcacatttataagtaaaaaatgactttttaagtatattgaataactaatgtat 265  Q
    ||||||||||||| ||||||| |||||||| || ||||||||| |||||||||    
T  4604971 tcacatttataagcaaaaaatcactttttaggtttattgaatacctaatgtat 4604919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 338
Target Start/End: Original strand, 24419540 - 24419669
Alignment:
Q  213 tcacatttataagtaaaaaatgactttttaagtatattgaataactaatgtatccggccacgtttataggttaaatacattaattattgaatatactta- 311  Q
    ||||||||||||| ||||||  ||||||||  |  |||||| ||||||||||||| | ||   ||||| || | |||||||||||||| ||| ||| ||     
T  24419540 tcacatttataagcaaaaaagaactttttagattcattgaagaactaatgtatccagtcataattataagtcagatacattaattattcaatgtacctaa 24419639  T
Q  312 ---gttgttttttgtttataaatgtgaccg 338  Q
       ||||||||||| |||||||||||||||    
T  24419640 aaagttgttttttgcttataaatgtgaccg 24419669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 213 - 300
Target Start/End: Original strand, 5346969 - 5347056
Alignment:
Q  213 tcacatttataagtaaaaaatgactttttaagtatattgaataactaatgtatccggccacgtttataggttaaatacattaattatt 300  Q
    ||||||||||||| |||||||| |||||||  || ||||||||| ||||||||||   ||| ||||||  ||| ||| ||||||||||    
T  5346969 tcacatttataagcaaaaaatgtctttttagatacattgaataattaatgtatccattcacatttatatattagatatattaattatt 5347056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 207 - 265
Target Start/End: Original strand, 21945059 - 21945117
Alignment:
Q  207 ctttgttcacatttataagtaaaaaatgactttttaagtatattgaataactaatgtat 265  Q
    ||||| ||||||||||||||||||||| ||||||||  |  |||||||| |||||||||    
T  21945059 ctttgatcacatttataagtaaaaaatcactttttagattcattgaatacctaatgtat 21945117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 262
Target Start/End: Complemental strand, 5700167 - 5700118
Alignment:
Q  213 tcacatttataagtaaaaaatgactttttaagtatattgaataactaatg 262  Q
    ||||||||||||| ||||||  |||||||||||| ||||||||| |||||    
T  5700167 tcacatttataagcaaaaaacaactttttaagtacattgaataattaatg 5700118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 266
Target Start/End: Original strand, 8900801 - 8900854
Alignment:
Q  213 tcacatttataagtaaaaaatgactttttaagtatattgaataactaatgtatc 266  Q
    |||||||||||||||| |||  |||||||| ||| ||||||||| |||||||||    
T  8900801 tcacatttataagtaataaacaactttttaggtacattgaataattaatgtatc 8900854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 300
Target Start/End: Complemental strand, 11900939 - 11900874
Alignment:
Q  235 actttttaagtatattgaataactaatgtatccggccacgtttataggttaaatacattaattatt 300  Q
    ||||||||  || ||||||||| |||| |||| || ||| ||||||||| ||||||||||||||||    
T  11900939 actttttagatacattgaataattaatatatctggtcacatttataggtcaaatacattaattatt 11900874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 266
Target Start/End: Complemental strand, 24419666 - 24419613
Alignment:
Q  213 tcacatttataagtaaaaaatgactttttaagtatattgaataactaatgtatc 266  Q
    ||||||||||||| ||||||  |||||||| ||| ||||||||| |||||||||    
T  24419666 tcacatttataagcaaaaaacaactttttaggtacattgaataattaatgtatc 24419613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 65; Significance: 2e-28; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 217 - 338
Target Start/End: Complemental strand, 2399829 - 2399704
Alignment:
Q  217 atttataagtaaaaaatgactttttaagtatattgaataactaatgtatccggccacgtttataggttaaatacattaattattgaatatactt----ag 312  Q
    |||||||| |||||||| |||||||||||||||||||||| |||||||||||| ||| |||||| |||| ||||||||| |||| ||| |||||    ||    
T  2399829 atttataaataaaaaataactttttaagtatattgaataattaatgtatccggtcacatttataagttagatacattaactattcaatgtacttagaaag 2399730  T
Q  313 ttgttttttgtttataaatgtgaccg 338  Q
    |||||||||| |||||||||||||||    
T  2399729 ttgttttttgcttataaatgtgaccg 2399704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 213 - 338
Target Start/End: Complemental strand, 34670485 - 34670357
Alignment:
Q  213 tcacatttataagtaaaaaatgactttttaagtatattgaataactaatgtatccggccacgtttataggttaaatacattaattattgaatatactt-- 310  Q
    ||||||||||||| |||||||||| |||||| || ||||||||| |||||||||||  ||| |||||   ||| |||||||||| |||| || ||| |      
T  34670485 tcacatttataagcaaaaaatgac-ttttaaatacattgaataattaatgtatccgatcacatttatgtattagatacattaatgattggatgtacctaa 34670387  T
Q  311 --agttgttttttgtttataaatgtgaccg 338  Q
      |||||||||||| |||||||||||||||    
T  34670386 aaagttgttttttgcttataaatgtgaccg 34670357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 215 - 300
Target Start/End: Original strand, 23097511 - 23097595
Alignment:
Q  215 acatttataagtaaaaaatgactttttaagtatattgaataactaatgtatccggccacgtttataggttaaatacattaattatt 300  Q
    ||||||||||| |||| ||||||||||| ||| |||||| || ||||||||||   ||| |||||| |||||||||||||||||||    
T  23097511 acatttataagcaaaa-atgactttttaggtacattgaacaattaatgtatcccatcacatttataagttaaatacattaattatt 23097595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 213 - 264
Target Start/End: Complemental strand, 3094468 - 3094417
Alignment:
Q  213 tcacatttataagtaaaaaatgactttttaagtatattgaataactaatgta 264  Q
    ||||||||||||||||||||| |||||| | ||  |||||||||||||||||    
T  3094468 tcacatttataagtaaaaaataacttttaaggttcattgaataactaatgta 3094417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 217 - 265
Target Start/End: Complemental strand, 2635726 - 2635678
Alignment:
Q  217 atttataagtaaaaaatgactttttaagtatattgaataactaatgtat 265  Q
    ||||||||||||||||  | ||||||| || ||||||||||||||||||    
T  2635726 atttataagtaaaaaacaattttttaaatacattgaataactaatgtat 2635678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 248 - 300
Target Start/End: Complemental strand, 15996214 - 15996162
Alignment:
Q  248 attgaataactaatgtatccggccacgtttataggttaaatacattaattatt 300  Q
    ||||||||| ||||||||||   ||||||||||||| | ||||||||||||||    
T  15996214 attgaataattaatgtatccaatcacgtttataggtcagatacattaattatt 15996162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 268
Target Start/End: Original strand, 45444725 - 45444781
Alignment:
Q  213 tcacatttataagtaaaaaatga-ctttttaagtatattgaataactaatgtatccg 268  Q
    ||||||||||||| ||||||  | |||||||||| ||||||||||||||||| ||||    
T  45444725 tcacatttataagcaaaaaaacaactttttaagtttattgaataactaatgtttccg 45444781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 4e-23; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 213 - 308
Target Start/End: Complemental strand, 43445163 - 43445068
Alignment:
Q  213 tcacatttataagtaaaaaatgactttttaagtatattgaataactaatgtatccggccacgtttataggttaaatacattaattattgaatatac 308  Q
    |||||||| |||| ||||||||| |||||| ||| ||||||||| |||||||||||| ||| ||||| ||||| ||||||||||||||||||||||    
T  43445163 tcacatttgtaagcaaaaaatgattttttatgtacattgaataattaatgtatccggtcacatttatgggttagatacattaattattgaatatac 43445068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 213 - 338
Target Start/End: Complemental strand, 41517497 - 41517368
Alignment:
Q  213 tcacatttataagtaaaaaatgactttttaagtatattgaataactaatgtatccggccacgtttataggttaaatacattaattattgaatatactt-- 310  Q
    ||||||||||||| ||||||| |||||||||||| ||||||||| |||||||||||  ||| ||||| ||||| ||||||||||| ||| || ||| |      
T  41517497 tcacatttataagcaaaaaataactttttaagtacattgaataattaatgtatccgatcacatttatgggttagatacattaattcttggatgtacctaa 41517398  T
Q  311 --agttgttttttgtttataaatgtgaccg 338  Q
      ||||| |||||| |||||||||||||||    
T  41517397 aaagttggtttttgcttataaatgtgaccg 41517368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 213 - 299
Target Start/End: Original strand, 27279494 - 27279580
Alignment:
Q  213 tcacatttataagtaaaaaatgactttttaagtatattgaataactaatgtatccggccacgtttataggttaaatacattaattat 299  Q
    ||||||||||||| ||||||| | |||||| ||  |||||||||||||||||||||  ||   |||||||| | |||||||||||||    
T  27279494 tcacatttataagcaaaaaataattttttaggttcattgaataactaatgtatccgatcataattataggtcagatacattaattat 27279580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 269
Target Start/End: Complemental strand, 41221758 - 41221706
Alignment:
Q  217 atttataagtaaaaaatgactttttaagtatattgaataactaatgtatccgg 269  Q
    ||||||||||||||||| | |||||| ||  ||||||||||||||||||||||    
T  41221758 atttataagtaaaaaataaatttttaggttcattgaataactaatgtatccgg 41221706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 248 - 307
Target Start/End: Original strand, 33956328 - 33956387
Alignment:
Q  248 attgaataactaatgtatccggccacgtttataggttaaatacattaattattgaatata 307  Q
    ||||||||| |||||||||||| ||  |||||| |||| |||||||||||||| ||||||    
T  33956328 attgaataattaatgtatccggtcatatttataagttagatacattaattattcaatata 33956387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 266
Target Start/End: Complemental strand, 29168633 - 29168580
Alignment:
Q  213 tcacatttataagtaaaaaatgactttttaagtatattgaataactaatgtatc 266  Q
    ||||||||||||| ||||||| ||||||||| || ||| ||||| |||||||||    
T  29168633 tcacatttataagcaaaaaataactttttaaatacattaaataattaatgtatc 29168580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 266
Target Start/End: Complemental strand, 33956419 - 33956366
Alignment:
Q  213 tcacatttataagtaaaaaatgactttttaagtatattgaataactaatgtatc 266  Q
    ||||||||||||| ||||||| | ||||||  |||||||||||| |||||||||    
T  33956419 tcacatttataagaaaaaaataaatttttagatatattgaataattaatgtatc 33956366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 265
Target Start/End: Original strand, 472419 - 472471
Alignment:
Q  213 tcacatttataagtaaaaaatgactttttaagtatattgaataactaatgtat 265  Q
    ||||||||||||  |||| || |||||||| || |||||||||||||||||||    
T  472419 tcacatttataaacaaaatataactttttaggtttattgaataactaatgtat 472471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 338
Target Start/End: Original strand, 29168507 - 29168636
Alignment:
Q  213 tcacatttataagtaaaaaatgactttttaagtatattgaataactaatgtatccggccacgtttataggttaaatacattaattattgaatatactta- 311  Q
    ||||| ||||||||||||||  |||||||| ||  |  |||||||||||  ||| || ||| |||||| || | |||||||||||||| ||| || |||     
T  29168507 tcacagttataagtaaaaaacaactttttaggttcaacgaataactaatacatctggtcacatttataagtaagatacattaattatttaatgtatttaa 29168606  T
Q  312 ---gttgttttttgtttataaatgtgaccg 338  Q
       ||| ||||||| |||||||||||||||    
T  29168607 aaagttattttttgcttataaatgtgaccg 29168636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 213 - 306
Target Start/End: Complemental strand, 9910628 - 9910535
Alignment:
Q  213 tcacatttataagtaaaaaa-tgactttttaagtatattgaataactaatgtatccggccacgtttataggttaaatacattaattattgaatat 306  Q
    |||||||||||||||||||| ||| |||||| ||||||||||||| |||||||||||| ||| ||||||||||| |||||||||||||| |||||    
T  9910628 tcacatttataagtaaaaaaatgattttttaggtatattgaataattaatgtatccggtcac-tttataggttagatacattaattattcaatat 9910535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 213 - 300
Target Start/End: Complemental strand, 26296342 - 26296255
Alignment:
Q  213 tcacatttataagtaaaaaatgactttttaagtatattgaataactaatgtatccggccacgtttataggttaaatacattaattatt 300  Q
    ||||||||||||||||||||||| ||||||| || ||||||||| ||| |||| | | ||| ||||||| ||||||||||||||||||    
T  26296342 tcacatttataagtaaaaaatgattttttaaatacattgaataattaacgtatacagtcacatttatagattaaatacattaattatt 26296255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 217 - 300
Target Start/End: Original strand, 862833 - 862916
Alignment:
Q  217 atttataagtaaaaaatgactttttaagtatattgaataactaatgtatccggccacgtttataggttaaatacattaattatt 300  Q
    ||||||||| ||||| |||||||||| ||| |||||||||||  ||||||| | ||| ||||||||||| ||||||||||||||    
T  862833 atttataagcaaaaattgactttttaggtacattgaataactggtgtatccagtcacatttataggttagatacattaattatt 862916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 213 - 300
Target Start/End: Complemental strand, 16260756 - 16260669
Alignment:
Q  213 tcacatttataagtaaaaaatgactttttaagtatattgaataactaatgtatccggccacgtttataggttaaatacattaattatt 300  Q
    ||||||||||||| ||||||| | |||||| ||||||||||||| |||||||| | | ||| ||||||||||| | ||||||||||||    
T  16260756 tcacatttataagaaaaaaattattttttacgtatattgaataattaatgtattcagtcacatttataggttagagacattaattatt 16260669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 217 - 281
Target Start/End: Original strand, 24252896 - 24252961
Alignment:
Q  217 atttataagtaaaa-aatgactttttaagtatattgaataactaatgtatccggccacgtttatag 281  Q
    |||||||||||||| |||||||||||||||||||||||||| |||||||| ||| ||| |||||||    
T  24252896 atttataagtaaaaaaatgactttttaagtatattgaataattaatgtattcggtcacatttatag 24252961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 215 - 311
Target Start/End: Original strand, 31159086 - 31159182
Alignment:
Q  215 acatttataagtaaaaaatgactttttaagtatattgaataactaatgtatccggccacgtttataggttaaatacattaattattgaatatactta 311  Q
    |||||||||||||||||||   |||||| ||  ||||||||| |||||||| ||| ||| |||||| |||| |||||||| ||||| ||||||||||    
T  31159086 acatttataagtaaaaaatacatttttatgttcattgaataattaatgtattcggtcacatttatatgttagatacattagttattcaatatactta 31159182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 213 - 295
Target Start/End: Original strand, 5069947 - 5070029
Alignment:
Q  213 tcacatttataagtaaaaaatgactttttaagtatattgaataactaatgtatccggccacgtttataggttaaatacattaa 295  Q
    ||||||||||||| ||||||  ||||||||  || ||||||||| |||||||||||||||  || |||||||| |||||||||    
T  5069947 tcacatttataagcaaaaaacaactttttagatacattgaataattaatgtatccggccatattaataggttagatacattaa 5070029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 266
Target Start/End: Complemental strand, 31159186 - 31159157
Alignment:
Q  237 tttttaagtatattgaataactaatgtatc 266  Q
    ||||||||||||||||||||||||||||||    
T  31159186 tttttaagtatattgaataactaatgtatc 31159157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 265
Target Start/End: Original strand, 3846438 - 3846490
Alignment:
Q  213 tcacatttataagtaaaaaatgactttttaagtatattgaataactaatgtat 265  Q
    ||||||||||||| ||||||| | |||||||||  ||||||||| ||||||||    
T  3846438 tcacatttataagcaaaaaataattttttaagttcattgaataaataatgtat 3846490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0514 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0514
Description:

Target: scaffold0514; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 213 - 301
Target Start/End: Original strand, 5827 - 5915
Alignment:
Q  213 tcacatttataagtaaaaaatgactttttaagtatattgaataactaatgtatccggccacgtttataggttaaatacattaattattg 301  Q
    ||||||||||||| |||||||||||||||| ||| |||||||||||||||||||||| ||  || |||||||| ||||||| |||||||    
T  5827 tcacatttataagcaaaaaatgactttttaggtacattgaataactaatgtatccggtcatcttcataggttagatacattgattattg 5915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 213 - 335
Target Start/End: Complemental strand, 6590916 - 6590790
Alignment:
Q  213 tcacatttataagtaaaaaatgactttttaagtatattgaataactaatgtatccggccacgtttataggttaaatacattaattattgaatatactt-- 310  Q
    ||||||||||||| ||||||| |||||||| ||| ||||||||| |||||||||||| ||  ||||| ||||| ||||||| ||||||| || ||| |      
T  6590916 tcacatttataagcaaaaaattactttttaggtacattgaataattaatgtatccggtcatatttatgggttagatacattgattattggatgtacctaa 6590817  T
Q  311 --agttgttttttgtttataaatgtga 335  Q
      |||||||||||| ||||||||||||    
T  6590816 gaagttgttttttgcttataaatgtga 6590790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 217 - 301
Target Start/End: Complemental strand, 14113342 - 14113258
Alignment:
Q  217 atttataagtaaaaaatgactttttaagtatattgaataactaatgtatccggccacgtttataggttaaatacattaattattg 301  Q
    |||| |||||||||||||||||||||  || ||||||||| |||||||| ||| ||| ||||| ||||| |||||||||||||||    
T  14113342 atttctaagtaaaaaatgactttttagatacattgaataattaatgtatacggtcacatttatgggttagatacattaattattg 14113258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 217 - 301
Target Start/End: Complemental strand, 6649202 - 6649118
Alignment:
Q  217 atttataagtaaaaaatgactttttaagtatattgaataactaatgtatccggccacgtttataggttaaatacattaattattg 301  Q
    ||||||||| |||||||||||||||| ||| ||||||||| |||||||||||| ||  || || ||||| ||||||| |||||||    
T  6649202 atttataagcaaaaaatgactttttaggtacattgaataattaatgtatccggtcatattcatgggttagatacattgattattg 6649118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 213 - 301
Target Start/End: Original strand, 44329164 - 44329252
Alignment:
Q  213 tcacatttataagtaaaaaatgactttttaagtatattgaataactaatgtatccggccacgtttataggttaaatacattaattattg 301  Q
    ||||| ||||||| ||||||||| ||||||| || ||||||||| ||||||||  || ||| ||||| ||||| |||||||||||||||    
T  44329164 tcacaattataagcaaaaaatgattttttaaatacattgaataattaatgtatttggtcacatttatgggttagatacattaattattg 44329252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 217 - 337
Target Start/End: Original strand, 30542473 - 30542596
Alignment:
Q  217 atttataagtaaaaaatgactttttaagtatattgaataactaatgtatccggccacgtttataggttaaatacattaattattgaatatactt----ag 312  Q
    |||||||| |||||||||| |||||||||||||||||||| |||| |||  ||  || |||| |||||||||| |||||||||| ||| |||||    |     
T  30542473 atttataactaaaaaatga-tttttaagtatattgaataattaatatatttggttacatttaaaggttaaatatattaattattcaatgtacttaaaaaa 30542571  T
Q  313 ttgttttttgtttataaatgtgacc 337  Q
    ||||||||| ||||||||| |||||    
T  30542572 ttgttttttatttataaatatgacc 30542596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 213 - 300
Target Start/End: Complemental strand, 30358713 - 30358623
Alignment:
Q  213 tcacatttataagtaaaaaatgactttttaagtatattgaataactaatgtatccggccacgtttataggttaa----atacattaattatt 300  Q
    ||||||||||||| ||||||  |||||||| ||||||||||||| |||||||||||| ||| ||||||| ||||    ||||||||||||||    
T  30358713 tcacatttataag-aaaaaacaactttttaggtatattgaataaataatgtatccggtcacatttatagattaattagatacattaattatt 30358623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 213 - 300
Target Start/End: Original strand, 1784096 - 1784183
Alignment:
Q  213 tcacatttataagtaaaaaatgactttttaagtatattgaataactaatgtatccggccacgtttataggttaaatacattaattatt 300  Q
    ||||||||||||  ||||||||| ||||||  || ||||||||  |||||||||||| ||  ||||| ||||| ||||||||||||||    
T  1784096 tcacatttataaacaaaaaatgattttttagatacattgaatatttaatgtatccggtcatatttatgggttagatacattaattatt 1784183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 230 - 300
Target Start/End: Complemental strand, 24185648 - 24185578
Alignment:
Q  230 aaatgactttttaagtatattgaataactaatgtatccggccacgtttataggttaaatacattaattatt 300  Q
    |||||| |||||| ||| ||||||||| |||||||||| | ||| ||||||||||| ||| ||||||||||    
T  24185648 aaatgattttttaggtacattgaataattaatgtatccagtcacatttataggttagatatattaattatt 24185578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 265
Target Start/End: Original strand, 2602060 - 2602112
Alignment:
Q  213 tcacatttataagtaaaaaatgactttttaagtatattgaataactaatgtat 265  Q
    ||||||||||||||||||||| | ||||||||| |||| ||||| ||||||||    
T  2602060 tcacatttataagtaaaaaataattttttaagtttattaaataattaatgtat 2602112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 266
Target Start/End: Complemental strand, 6616643 - 6616590
Alignment:
Q  213 tcacatttataagtaaaaaatgactttttaagtatattgaataactaatgtatc 266  Q
    ||||||||||||| ||||||||| |||||| ||| || |||||| |||||||||    
T  6616643 tcacatttataagcaaaaaatgattttttaggtacatggaataattaatgtatc 6616590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 266
Target Start/End: Original strand, 27988086 - 27988139
Alignment:
Q  213 tcacatttataagtaaaaaatgactttttaagtatattgaataactaatgtatc 266  Q
    ||||||||||||| ||||||  |||||||||||  ||||||||| |||||||||    
T  27988086 tcacatttataagcaaaaaacaactttttaagttcattgaataagtaatgtatc 27988139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 266
Target Start/End: Original strand, 28045388 - 28045441
Alignment:
Q  213 tcacatttataagtaaaaaatgactttttaagtatattgaataactaatgtatc 266  Q
    ||||||||||||| ||||||  |||||||||||  ||||||||| |||||||||    
T  28045388 tcacatttataagcaaaaaacaactttttaagttcattgaataagtaatgtatc 28045441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 6e-19; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 215 - 307
Target Start/End: Complemental strand, 30046438 - 30046346
Alignment:
Q  215 acatttataagtaaaaaatgactttttaagtatattgaataactaatgtatccggccacgtttataggttaaatacattaattattgaatata 307  Q
    ||||||||||| ||||||| || |||||  || ||||||||| |||||||||||||||| ||||||||||| ||||||||| |||| ||||||    
T  30046438 acatttataagcaaaaaatcacattttagatacattgaataattaatgtatccggccacatttataggttagatacattaactattcaatata 30046346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 213 - 311
Target Start/End: Complemental strand, 14509954 - 14509856
Alignment:
Q  213 tcacatttataagtaaaaaatgactttttaagtatattgaataactaatgtatccggccacgtttataggttaaatacattaattattgaatatactta 311  Q
    |||||||||||| |||||||| | ||||||  |||||||||||| ||||||||||   ||  |||||  ||||||||||||||||||||||| ||||||    
T  14509954 tcacatttataaataaaaaataattttttagatatattgaataattaatgtatccaatcatatttatgagttaaatacattaattattgaatgtactta 14509856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 213 - 307
Target Start/End: Original strand, 28499789 - 28499883
Alignment:
Q  213 tcacatttataagtaaaaaatgactttttaagtatattgaataactaatgtatccggccacgtttataggttaaatacattaattattgaatata 307  Q
    ||||||||||||| ||||||| | ||||||  |  |||||||||||||||||||||| ||   |||||| |||||||||||||||||| ||||||    
T  28499789 tcacatttataagcaaaaaataattttttagattcattgaataactaatgtatccggtcataattatagattaaatacattaattattcaatata 28499883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 213 - 300
Target Start/End: Original strand, 8355556 - 8355643
Alignment:
Q  213 tcacatttataagtaaaaaatgactttttaagtatattgaataactaatgtatccggccacgtttataggttaaatacattaattatt 300  Q
    ||||||||||||||||||| |||  |||||| |||||| ||||| |||||||||||  ||| |||||| |||  ||||||||||||||    
T  8355556 tcacatttataagtaaaaattgatattttaaatatattaaataattaatgtatccgatcacatttatatgttggatacattaattatt 8355643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 229 - 338
Target Start/End: Original strand, 14751148 - 14751261
Alignment:
Q  229 aaaatgactttttaagtatattgaataactaatgtatccggccacgtttataggttaaatacattaattattgaatatactt----agttgttttttgtt 324  Q
    |||||||||||||| ||  ||||||||| |||||||||| |  || ||||||||||| |||||| || |||| ||| ||| |    |||||||||||| |    
T  14751148 aaaatgactttttaggtgcattgaataattaatgtatccagttacatttataggttagatacatcaactattcaatgtacctaaaaagttgttttttgct 14751247  T
Q  325 tataaatgtgaccg 338  Q
    ||||||||||||||    
T  14751248 tataaatgtgaccg 14751261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 213 - 294
Target Start/End: Complemental strand, 11089426 - 11089345
Alignment:
Q  213 tcacatttataagtaaaaaatgactttttaagtatattgaataactaatgtatccggccacgtttataggttaaatacatta 294  Q
    ||||||||||||||||||||| | |||||||||  || |||||| |||| | ||||| ||| |||||| |||| ||||||||    
T  11089426 tcacatttataagtaaaaaataattttttaagttcatcgaataattaatatttccggtcacatttatatgttagatacatta 11089345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 213 - 266
Target Start/End: Original strand, 18200668 - 18200721
Alignment:
Q  213 tcacatttataagtaaaaaatgactttttaagtatattgaataactaatgtatc 266  Q
    ||||||||||||| ||||| | | ||||||||| ||||||||||||||||||||    
T  18200668 tcacatttataagcaaaaattaattttttaagtttattgaataactaatgtatc 18200721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 301
Target Start/End: Complemental strand, 8568009 - 8567921
Alignment:
Q  213 tcacatttataagtaaaaaatgactttttaagtatattgaataactaatgtatccggccacgtttataggttaaatacattaattattg 301  Q
    ||||||||||||  ||||||||| ||||||| || ||||||||| |||||||||  | ||| |||||  |||  |||||||||||||||    
T  8568009 tcacatttataaacaaaaaatgattttttaaatacattgaataattaatgtatcttgtcacatttatgagttggatacattaattattg 8567921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 304
Target Start/End: Complemental strand, 19522644 - 19522560
Alignment:
Q  220 tataagtaaaaaatgactttttaagtatattgaataactaatgtatccggccacgtttataggttaaatacattaattattgaat 304  Q
    ||||| ||||||||||||||||| ||| ||| ||||| |||| |||  |  ||| ||||| ||||| ||||||||||||||||||    
T  19522644 tataaataaaaaatgactttttaggtacattaaataattaatatatttgatcacatttatgggttagatacattaattattgaat 19522560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 265
Target Start/End: Complemental strand, 28499914 - 28499863
Alignment:
Q  213 tcacatttataagtaaaaaatgactttttaagtatattgaataactaatgtat 265  Q
    ||||||||||||| ||||||| ||||||||  |||||||||||| ||||||||    
T  28499914 tcacatttataag-aaaaaataactttttagatatattgaataattaatgtat 28499863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 217 - 269
Target Start/End: Original strand, 35463964 - 35464016
Alignment:
Q  217 atttataagtaaaaaatgactttttaagtatattgaataactaatgtatccgg 269  Q
    ||||||||| ||||||| | |||||| ||  ||||||||||||||||||||||    
T  35463964 atttataagcaaaaaataattttttaggttcattgaataactaatgtatccgg 35464016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 265
Target Start/End: Complemental strand, 43221694 - 43221642
Alignment:
Q  213 tcacatttataagtaaaaaatgactttttaagtatattgaataactaatgtat 265  Q
    ||||||||||||| ||||||| |||||||| || ||||||| || ||||||||    
T  43221694 tcacatttataagcaaaaaataactttttaggtttattgaaaaattaatgtat 43221642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 213 - 340
Target Start/End: Original strand, 16867625 - 16867756
Alignment:
Q  213 tcacatttataagtaaaaaatgactttttaagtatattgaataactaatgtatccggccacgtttataggttaaatacattaattattgaatatactt-- 310  Q
    ||||||||||||| ||||||  |||||||| ||| ||||||||||||||| || ||| ||  ||||| ||||| |||||| |||||||| || ||| |      
T  16867625 tcacatttataagcaaaaaacaactttttaggtacattgaataactaatgcattcggtcatatttatgggttagatacatcaattattggatgtacctaa 16867724  T
Q  311 --agttgttttttgtttataaatgtgaccgaa 340  Q
      |||||||||||| |||||||||||| ||||    
T  16867725 aaagttgttttttgcttataaatgtgatcgaa 16867756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 213 - 344
Target Start/End: Original strand, 29212850 - 29212985
Alignment:
Q  213 tcacatttataagtaaaaaatgactttttaagtatattgaataactaatgtatccggccacgtttataggttaaatacattaattattgaatatactt-- 310  Q
    ||||||||||||||||||||    ||||||  ||||||||||||  ||||||||| | ||| ||||||||| | |||||||||||||| ||| ||| |      
T  29212850 tcacatttataagtaaaaaacatttttttagatatattgaataatcaatgtatccagtcacatttataggtcagatacattaattattcaatgtacctaa 29212949  T
Q  311 --agttgttttttgtttataaatgtgaccgaaatga 344  Q
      |   |||||||| |||||||||||||||||||||    
T  29212950 aaaacagttttttgcttataaatgtgaccgaaatga 29212985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 213 - 340
Target Start/End: Original strand, 18093785 - 18093916
Alignment:
Q  213 tcacatttataagtaaaaaatgactttttaagtatattgaataactaatgtatccggccacgtttataggttaaatacattaattattgaatatactt-- 310  Q
    ||||||||||||  ||||||  | ||||||| || ||||||||| |||||||||  | ||| ||||||||| | |||||||||||||| |||| || |      
T  18093785 tcacatttataaacaaaaaacaaatttttaaatacattgaataattaatgtatcttgtcacatttataggtcagatacattaattattcaataaacctaa 18093884  T
Q  311 --agttgttttttgtttataaatgtgaccgaa 340  Q
      | |||||| ||| |||||||||||||||||    
T  18093885 aaacttgtttattgcttataaatgtgaccgaa 18093916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 227 - 333
Target Start/End: Original strand, 10937919 - 10938028
Alignment:
Q  227 aaaaaatgactttttaagtatattgaataactaatgtatccggccacgtttataggttaaatacattaattattgaatatactt----agttgttttttg 322  Q
    ||||||||| |||| || |||||||||||| |||| |||| || ||| ||||||| ||| ||| ||||||||||| ||||||||    |||||||||||     
T  10937919 aaaaaatga-ttttcaaatatattgaataattaatatatcgggtcacatttatagattagatatattaattattggatatacttaaaaagttgttttttt 10938017  T
Q  323 tttataaatgt 333  Q
     ||||||||||    
T  10938018 attataaatgt 10938028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 213 - 266
Target Start/End: Complemental strand, 30122088 - 30122035
Alignment:
Q  213 tcacatttataagtaaaaaatgactttttaagtatattgaataactaatgtatc 266  Q
    ||||||||||||| ||||||| | |||||| ||||||||||||| |||||||||    
T  30122088 tcacatttataagcaaaaaataattttttaggtatattgaataattaatgtatc 30122035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 265
Target Start/End: Complemental strand, 25109039 - 25108987
Alignment:
Q  213 tcacatttataagtaaaaaatgactttttaagtatattgaataactaatgtat 265  Q
    ||||||||||||||||||||| | |||||| ||  ||||||||||||||||||    
T  25109039 tcacatttataagtaaaaaataattttttatgttcattgaataactaatgtat 25108987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 291
Target Start/End: Original strand, 27696621 - 27696698
Alignment:
Q  214 cacatttataagtaaaaaatgactttttaagtatattgaataactaatgtatccggccacgtttataggttaaataca 291  Q
    ||||||||||| |||||||| ||||||||| | |||| ||||  |||||||||||  ||| |||||| |||| |||||    
T  27696621 cacatttataaataaaaaataactttttaaatttattaaatatttaatgtatccgatcacatttataagttagataca 27696698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0470 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0470
Description:

Target: scaffold0470; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 266
Target Start/End: Complemental strand, 5929 - 5876
Alignment:
Q  213 tcacatttataagtaaaaaatgactttttaagtatattgaataactaatgtatc 266  Q
    ||||||||||||| ||||||||| |||||| ||| || |||||| |||||||||    
T  5929 tcacatttataagcaaaaaatgattttttaggtacatggaataattaatgtatc 5876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University