View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1936_low_17 (Length: 355)

Name: NF1936_low_17
Description: NF1936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1936_low_17
NF1936_low_17
[»] chr2 (11 HSPs)
chr2 (18-355)||(15645603-15645940)
chr2 (18-210)||(15654655-15654844)
chr2 (18-195)||(15624978-15625152)
chr2 (219-355)||(15654958-15655092)
chr2 (219-355)||(15625409-15625545)
chr2 (273-355)||(15494077-15494159)
chr2 (21-127)||(15534205-15534311)
chr2 (32-122)||(15601400-15601490)
chr2 (292-355)||(15517883-15517946)
chr2 (292-355)||(15534698-15534761)
chr2 (21-127)||(15517692-15517798)


Alignment Details
Target: chr2 (Bit Score: 330; Significance: 0; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 18 - 355
Target Start/End: Original strand, 15645603 - 15645940
Alignment:
Q  18 caattgagaatagctcttgtgcagtaaagccttcagagtttctcatctttatctgtgcaggcaacattatcttctttactttctgtcacatgaaaatgta 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15645603 caattgagaatagctcttgtgcagtaaagccttcagagtttctcatctttatctgtgcaggcaacattatcttctttactttctgtcacatgaaaatgta 15645702  T
Q  118 tatatgttagtaaaatacatacagatatgtaaaaaatttatattgctattgacacagtgacaaacacatactcaattaagagttttatttatagtggaac 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  15645703 tatatgttagtaaaatacatacagatatgtaaaaaatttatattgctattgacacagtgacaaacacatactcaattaagagttttatttatagtggaat 15645802  T
Q  218 ggaataggataagtgtggaagtagctcgcttttaatttctcaataaaatgaataaaaaagggttgcattgcatgtacctcaaaccatagtaactcgacac 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  15645803 ggaataggataagtgtggaagtagctcgcttttaatttctcaataaaatgaataaaaaagggttgcattgcatgtacctcaaaccatagtaactcgacgc 15645902  T
Q  318 acatttgaaaagcagctccagaaaccaattcaagttga 355  Q
    ||||||||||||||||||||||||||||||||||||||    
T  15645903 acatttgaaaagcagctccagaaaccaattcaagttga 15645940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 18 - 210
Target Start/End: Original strand, 15654655 - 15654844
Alignment:
Q  18 caattgagaatagctcttgtgcagtaaagccttcagagtttctcatctttatctgtgcaggcaacattatcttctttactttctgtcacatgaaaatgta 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15654655 caattgagaatagctcttgtgcagtaaagccttcagagtttctcatctttatctgtgcaggcaacattatcttctttactttctgtcacatgaaaatgta 15654754  T
Q  118 tatatgtt-agtaaaatacatacagatatgtaaaaaatttatattgctattgacacagtgacaaacacatactcaattaagagttttatttata 210  Q
    |||| ||| ||||||    ||| |||||||| ||   ||||||||||||||||||||||| |||| ||||||||||| ||||| ||||||||||    
T  15654755 tatacgttaagtaaa----atatagatatgttaattttttatattgctattgacacagtggcaaatacatactcaatgaagagctttatttata 15654844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 18 - 195
Target Start/End: Original strand, 15624978 - 15625152
Alignment:
Q  18 caattgagaatagctcttgtgcagtaaagccttcagagtttctcatctttatctgtgcaggcaacattatcttctttactttctgtcacatgaaaatgta 117  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  15624978 caattgagaatagctcttgtgctgtaaagccttcagagtttctcatctttatctgtccaggcaacattatcttctttactttctgtcacatgaaaatgta 15625077  T
Q  118 tatatgtt-agtaaaatacatacagatatgtaaaaaatttatattgctattgacacagtgacaaacacatactcaatta 195  Q
    |||||||| ||||||    ||| || ||||| ||   ||||||||||||||||||||||| |||||| |||||||||||    
T  15625078 tatatgttaagtaaa----atatagctatgttaattttttatattgctattgacacagtggcaaacaaatactcaatta 15625152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 219 - 355
Target Start/End: Original strand, 15654958 - 15655092
Alignment:
Q  219 gaataggataagtgtggaagtagctcgcttttaatttctcaataaaatgaataaaaaagggttgcattgcatgtacctcaaaccatagtaactcgacaca 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||   |||||| ||||||||||||||||||||||||||| ||||||||| ||    
T  15654958 gaataggataagtgtggaagtagctcgcttttaatttctcaataaaatgat--aaaaagagttgcattgcatgtacctcaaaccatactaactcgacgca 15655055  T
Q  319 catttgaaaagcagctccagaaaccaattcaagttga 355  Q
    |||||||||||||||||||||||||||||||||||||    
T  15655056 catttgaaaagcagctccagaaaccaattcaagttga 15655092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 219 - 355
Target Start/End: Original strand, 15625409 - 15625545
Alignment:
Q  219 gaataggataagtgtggaagtagctcgcttttaatttctcaataaaatgaataaaaaagggttgcattgcatgtacctcaaaccatagtaactcgacaca 318  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |  ||    
T  15625409 gaataggataagtgtggaagtagcttgcttttaatttctcaataaaatgaataaaaaagggttgcattgcatgtacctcaaaccataataactcaaggca 15625508  T
Q  319 catttgaaaagcagctccagaaaccaattcaagttga 355  Q
    |||||||||||| |  |||||||||||||||||||||    
T  15625509 catttgaaaagctgacccagaaaccaattcaagttga 15625545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 273 - 355
Target Start/End: Original strand, 15494077 - 15494159
Alignment:
Q  273 aaaagggttgcattgcatgtacctcaaaccatagtaactcgacacacatttgaaaagcagctccagaaaccaattcaagttga 355  Q
    |||| ||||||||| |||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  15494077 aaaacggttgcattacatgtacctcaaaccatactaactcgacacacatttgaaaagctgctccagaaaccaattcaagttga 15494159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 21 - 127
Target Start/End: Original strand, 15534205 - 15534311
Alignment:
Q  21 ttgagaatagctcttgtgcagtaaagccttcagagtttctcatctttatctgtgcaggcaacattatcttctttactttctgtcacatgaaaatgtatat 120  Q
    ||||||||| |||||||||||| |||| |||||||||| ||| |||||| ||||| |||||||||||||||||||| |||| ||| ||||||||||||||    
T  15534205 ttgagaataactcttgtgcagtcaagcgttcagagtttttcaactttatttgtgctggcaacattatcttctttacattctatcatatgaaaatgtatat 15534304  T
Q  121 atgttag 127  Q
    |||||||    
T  15534305 atgttag 15534311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 32 - 122
Target Start/End: Original strand, 15601400 - 15601490
Alignment:
Q  32 tcttgtgcagtaaagccttcagagtttctcatctttatctgtgcaggcaacattatcttctttactttctgtcacatgaaaatgtatatat 122  Q
    ||||||||||||| |||||||||||||||||| ||||| ||||| |||| |||||||||||||||||||| ||| |||||||||| |||||    
T  15601400 tcttgtgcagtaaggccttcagagtttctcatgtttatttgtgctggcagcattatcttctttactttctatcatatgaaaatgtttatat 15601490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 292 - 355
Target Start/End: Original strand, 15517883 - 15517946
Alignment:
Q  292 tacctcaaaccatagtaactcgacacacatttgaaaagcagctccagaaaccaattcaagttga 355  Q
    |||||||||||||| |||||||||||||||||||||||| || |||||||||||||||||||||    
T  15517883 tacctcaaaccataataactcgacacacatttgaaaagctgcaccagaaaccaattcaagttga 15517946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 292 - 355
Target Start/End: Original strand, 15534698 - 15534761
Alignment:
Q  292 tacctcaaaccatagtaactcgacacacatttgaaaagcagctccagaaaccaattcaagttga 355  Q
    |||||||||||||| |||||| |  |||||||||||||| ||||||||||||||||||||||||    
T  15534698 tacctcaaaccataataactcaaggcacatttgaaaagctgctccagaaaccaattcaagttga 15534761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 21 - 127
Target Start/End: Original strand, 15517692 - 15517798
Alignment:
Q  21 ttgagaatagctcttgtgcagtaaagccttcagagtttctcatctttatctgtgcaggcaacattatcttctttactttctgtcacatgaaaatgtatat 120  Q
    ||||||| || |||| |||||| | |||||  |||||| ||  ||| |||||||| |||| ||||||||||||||| |||| ||| ||||||||||||||    
T  15517692 ttgagaacagttcttctgcagtcacgcctttggagtttttcgacttaatctgtgcgggcagcattatcttctttacattctatcatatgaaaatgtatat 15517791  T
Q  121 atgttag 127  Q
    |||||||    
T  15517792 atgttag 15517798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University