View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1936_low_18 (Length: 322)
Name: NF1936_low_18
Description: NF1936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1936_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 18 - 307
Target Start/End: Original strand, 42015714 - 42016003
Alignment:
| Q |
18 |
tttaattactctgtttatccaaacggttgtcttagccattacaatttgattttgacgatgaagcacatatttgtgtacactgtaacagttggtgagagtg |
117 |
Q |
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| T |
42015714 |
tttaattactctgtttatccaaacggttgtcttcgccattacaatttgattttgacgatgaagcacatatttgtgtacactgtaacagttggtgagagtg |
42015813 |
T |
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| Q |
118 |
gtcctttagttgagagatggaagtggtcgaggccaaatgcacgtgtttatacattgttgattcagggtttggctgcatctttgagggtttcggatgctct |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42015814 |
gtcctttagttgagagatggaagtggtcgaggccaaatgcacgtgtttatacattgttgattcagggtttggctgcatctttgagggtttcggatgctct |
42015913 |
T |
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| Q |
218 |
tagtgtggttaaatatatatgtgaggtgggcgtctctccttctgaggaggtagggttaaataattttcttgtttctcttgagttcttcat |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42015914 |
tagtgtggttaaatatatatgtgaggtgggcgtctctccttctgaggaggtagggttaaataattttcttgtttctcttgagttcttcat |
42016003 |
T |
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