View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1936_low_2 (Length: 729)

Name: NF1936_low_2
Description: NF1936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1936_low_2
NF1936_low_2
[»] chr6 (8 HSPs)
chr6 (8-680)||(5584048-5584719)
chr6 (508-680)||(26274626-26274796)
chr6 (531-680)||(21254878-21255026)
chr6 (662-722)||(5583991-5584051)
chr6 (615-680)||(29409250-29409316)
chr6 (615-680)||(33899004-33899070)
chr6 (614-680)||(34911034-34911100)
chr6 (620-680)||(17829997-17830058)
[»] chr3 (11 HSPs)
chr3 (508-682)||(14651099-14651272)
chr3 (531-680)||(45423768-45423916)
chr3 (615-680)||(31084243-31084309)
chr3 (615-681)||(49526667-49526734)
chr3 (613-680)||(10853266-10853334)
chr3 (633-680)||(25181265-25181311)
chr3 (620-682)||(29252122-29252185)
chr3 (615-680)||(23496353-23496419)
chr3 (615-680)||(50664794-50664860)
chr3 (633-682)||(51285681-51285730)
chr3 (620-680)||(52966808-52966869)
[»] chr8 (11 HSPs)
chr8 (508-706)||(2071541-2071738)
chr8 (508-682)||(40792201-40792374)
chr8 (654-710)||(8130058-8130114)
chr8 (570-680)||(15206696-15206806)
chr8 (528-680)||(6399107-6399259)
chr8 (598-682)||(26490960-26491045)
chr8 (609-680)||(3467571-3467643)
chr8 (615-680)||(4941780-4941846)
chr8 (615-680)||(28425471-28425537)
chr8 (615-680)||(31246314-31246380)
chr8 (614-682)||(39219764-39219833)
[»] chr2 (15 HSPs)
chr2 (508-650)||(3680713-3680854)
chr2 (556-680)||(3602457-3602580)
chr2 (531-680)||(25747879-25748027)
chr2 (546-680)||(3853877-3854011)
chr2 (531-680)||(8041242-8041389)
chr2 (613-680)||(27911449-27911517)
chr2 (615-680)||(34433303-34433369)
chr2 (615-682)||(18511147-18511215)
chr2 (615-682)||(23359925-23359993)
chr2 (655-706)||(12110974-12111025)
chr2 (615-680)||(1945036-1945102)
chr2 (654-688)||(26207903-26207937)
chr2 (615-680)||(36548244-36548310)
chr2 (620-680)||(30007550-30007611)
chr2 (615-667)||(42089538-42089591)
[»] chr7 (14 HSPs)
chr7 (508-632)||(44679280-44679403)
chr7 (531-680)||(40903154-40903302)
chr7 (528-680)||(47021890-47022042)
chr7 (620-680)||(47217527-47217588)
chr7 (598-688)||(45823245-45823337)
chr7 (598-680)||(42740432-42740515)
chr7 (598-680)||(48459750-48459833)
chr7 (547-688)||(1766415-1766556)
chr7 (615-680)||(39634151-39634217)
chr7 (615-680)||(42752177-42752243)
chr7 (547-680)||(44967385-44967518)
chr7 (556-680)||(3622446-3622570)
chr7 (620-680)||(10371944-10372005)
chr7 (620-680)||(41715719-41715780)
[»] chr1 (13 HSPs)
chr1 (519-680)||(46581185-46581345)
chr1 (615-680)||(23628706-23628771)
chr1 (620-680)||(47085898-47085959)
chr1 (615-680)||(20800277-20800343)
chr1 (615-680)||(35569202-35569268)
chr1 (633-696)||(6932095-6932158)
chr1 (556-682)||(25061228-25061354)
chr1 (615-680)||(1199887-1199953)
chr1 (615-669)||(40709236-40709290)
chr1 (620-680)||(5410704-5410765)
chr1 (620-680)||(7826354-7826415)
chr1 (620-680)||(27801652-27801713)
chr1 (633-706)||(34571084-34571157)
[»] scaffold0041 (1 HSPs)
scaffold0041 (531-680)||(46716-46864)
[»] chr5 (5 HSPs)
chr5 (531-680)||(7178745-7178893)
chr5 (615-680)||(22482239-22482305)
chr5 (620-680)||(24036628-24036689)
chr5 (528-673)||(41834856-41835001)
chr5 (615-680)||(40495354-40495420)
[»] chr4 (16 HSPs)
chr4 (609-706)||(36150619-36150717)
chr4 (531-680)||(19599495-19599642)
chr4 (598-680)||(42944897-42944980)
chr4 (615-660)||(53914920-53914965)
chr4 (620-683)||(4954047-4954111)
chr4 (598-680)||(48550426-48550509)
chr4 (611-687)||(33843799-33843876)
chr4 (615-682)||(54487217-54487285)
chr4 (598-680)||(39636789-39636872)
chr4 (615-680)||(16566326-16566392)
chr4 (528-680)||(19592230-19592382)
chr4 (615-652)||(8754179-8754216)
chr4 (620-680)||(33574204-33574265)
chr4 (641-682)||(46958071-46958112)
chr4 (620-680)||(48550243-48550304)
chr4 (620-680)||(54488631-54488692)
[»] scaffold0172 (1 HSPs)
scaffold0172 (655-706)||(15216-15267)
[»] scaffold0369 (1 HSPs)
scaffold0369 (615-680)||(8485-8551)


Alignment Details
Target: chr6 (Bit Score: 557; Significance: 0; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 557; E-Value: 0
Query Start/End: Original strand, 8 - 680
Target Start/End: Complemental strand, 5584719 - 5584048
Alignment:
Q  8 aaactgcgttattgatgtgaaatatttatcggctttgtcgatgacccgtctttattcgagaactcgtcaaattatttttaatagggcatctccttcaatt 107  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||  ||||||||||||| |||||||||||||| ||||||||||| |    
T  5584719 aaactgcgttattgatgtaaaatatttatcggctttgtcgatgacccgtctttattacagaactcgtcaaactatttttaatagggtatctccttcaact 5584620  T
Q  108 aaattcttttatccacaaaactcaaacttaagacattgcttaaataatctgagtcgaaatctactcagatcggttgtaatattggtgaattaatgatgct 207  Q
    | ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||    
T  5584619 atattcttttatccacaaaactcaaacttaagacattacttaaataatctgagtcgaaatctacttagattggttgtaatattggtgaattaatgatgct 5584520  T
Q  208 ttgataattannnnnnnnnnnnctttatggaggaagaaattcagggattcatagaaatttgtgaccggattaatttgtgattgtaatattttgaagttat 307  Q
    ||||||||||            |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  5584519 ttgataattattttttgttttcctttatggaggaagaaattcagggattcatagaaatttgtgaccagattaatttgtgattgtaatattttgaagttat 5584420  T
Q  308 ggccatttgctatttccatatgcttaatttccaagttatgtgtccgccatttcctctcatgaaaagactcaaagcttgactctgaaagctattgcatgtg 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  5584419 ggccatttgctatttccatatgcttaatttccaagttatgtgtccgccatttcctctcatgaaaagactcaaagcttgaatctgaaagctattgcatgtg 5584320  T
Q  408 ggtttataaatgccagaaatatattttcaactcaattttgataacatagatatttttatgggtttaaattgaaatgaatcctactaatttatgtagaact 507  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  5584319 ggtttataaatgccagaaatatattttcaactcaattttgataacatagatatttttatgggttaaaattgaaatgaatcctactaatttatgtagaact 5584220  T
Q  508 tatataatataaatgatgtctaatttggtaattctactttcaaaagctattttcatttaaattatccaaacaacttgaattggtaaaaattcacttctat 607  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||    
T  5584219 tatataatataaatgatgtctaatttggtaattctactttcaaaagctattttgatttaaattatccaaacaacttgaattggtaaaaa-tcacttctat 5584121  T
Q  608 gtaaatatatcaaaacataaatcaattacattaaactcacttttagtcaaaataaattctatcaaaatcaatt 680  Q
     |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||    
T  5584120 ataaatatatccaaacataaatcaattacattaaactcacttttagtcaaaatcaattctgtcaaaatcaatt 5584048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 508 - 680
Target Start/End: Complemental strand, 26274796 - 26274626
Alignment:
Q  508 tatataatataaatgatgtctaatttggtaattctactttcaaaagctattttcatttaaattatccaaacaacttgaattggtaaaaattcacttctat 607  Q
    |||||||||||||||||||||||||| |||||| ||| ||||||||| ||||| ||| ||||||| |||| ||||||||||||||||||| || |||||     
T  26274796 tatataatataaatgatgtctaattttgtaatt-tacattcaaaagcaattttgattcaaattattcaaataacttgaattggtaaaaat-caattctac 26274699  T
Q  608 gtaaatatatcaaaacataaatcaattacattaaactcacttttagtcaaaataaattctatcaaaatcaatt 680  Q
     ||||| |||| |||||||||  ||||||||| |||||||||||||||| ||| |||| | ||||||||||||    
T  26274698 ataaatttatctaaacataaacgaattacattcaactcacttttagtcagaatcaattatgtcaaaatcaatt 26274626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 531 - 680
Target Start/End: Complemental strand, 21255026 - 21254878
Alignment:
Q  531 tttggtaattctactttcaaaagctattttcatttaaattatccaaacaacttgaattggtaaaaattcacttctatgtaaatatatcaaaacataaatc 630  Q
    |||||||||| ||||||||||||| ||||| ||| ||| || | ||||||| | ||||| ||| ||| || || || || | | |||| |||||||||||    
T  21255026 tttggtaattatactttcaaaagcaattttgattcaaactaccgaaacaacataaattgataagaat-caattttaggttattgtatccaaacataaatc 21254928  T
Q  631 aattacattaaactcacttttagtcaaaataaattctatcaaaatcaatt 680  Q
    ||||||||| |||||||||||| ||||| | |||||| ||||| ||||||    
T  21254927 aattacattcaactcacttttaatcaaattcaattctctcaaactcaatt 21254878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 662 - 722
Target Start/End: Complemental strand, 5584051 - 5583991
Alignment:
Q  662 aattctatcaaaatcaattttcgtcactgcagaacttaacacacattaagaccctttgata 722  Q
    ||||||||||||||||||| ||||||| ||||||| ||||||||| ||||||| |||||||    
T  5584051 aattctatcaaaatcaattctcgtcaccgcagaacctaacacacactaagaccttttgata 5583991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 615 - 680
Target Start/End: Complemental strand, 29409316 - 29409250
Alignment:
Q  615 tatcaaaacataaatcaatt-acattaaactcacttttagtcaaaataaattctatcaaaatcaatt 680  Q
    |||| ||||||||||||||| |||| ||||||||||||| ||||||| |||||| ||||| ||||||    
T  29409316 tatccaaacataaatcaattcacatcaaactcacttttaatcaaaatcaattctttcaaactcaatt 29409250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 615 - 680
Target Start/End: Complemental strand, 33899070 - 33899004
Alignment:
Q  615 tatcaaaacataaatcaatt-acattaaactcacttttagtcaaaataaattctatcaaaatcaatt 680  Q
    |||| ||||||||||||||| | || ||||||||||||| ||||||| |||||| ||||| ||||||    
T  33899070 tatccaaacataaatcaattcatatcaaactcacttttaatcaaaatcaattctctcaaactcaatt 33899004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 614 - 680
Target Start/End: Original strand, 34911034 - 34911100
Alignment:
Q  614 atatcaaaacataaatcaattacattaaactcacttttagtcaaaataaattctatcaaaatcaatt 680  Q
    ||||| |||||||||||| |||| || |||||||||||||||  ||| |||||  ||||||||||||    
T  34911034 atatccaaacataaatcacttaccttcaactcacttttagtcggaatcaattcactcaaaatcaatt 34911100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 620 - 680
Target Start/End: Complemental strand, 17830058 - 17829997
Alignment:
Q  620 aaacataaatcaatt-acattaaactcacttttagtcaaaataaattctatcaaaatcaatt 680  Q
    ||||||||||||||| ||||| ||||||||||||  |||||| |||||| ||||| ||||||    
T  17830058 aaacataaatcaattcacattcaactcacttttaaccaaaatcaattctctcaaactcaatt 17829997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 131; Significance: 1e-67; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 508 - 682
Target Start/End: Complemental strand, 14651272 - 14651099
Alignment:
Q  508 tatataatataaatgatgtctaatttggtaattctactttcaaaagctattttcatttaaattatccaaacaacttgaattggtaaaaattcacttctat 607  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||    
T  14651272 tatataatataaatgatgtctaatttggtaattatactttcaaaagctattttgattcaaattatccaaacaacttgaattggtaaaaa-tcacttctat 14651174  T
Q  608 gtaaatatatcaaaacataaatcaattacattaaactcacttttagtcaaaataaattctatcaaaatcaatttt 682  Q
    |||| |||||||||||| |||||||||| ||| |||||||||||| ||||||| |||||||||||||||||||||    
T  14651173 gtaagtatatcaaaacacaaatcaattatattcaactcacttttaatcaaaatcaattctatcaaaatcaatttt 14651099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 531 - 680
Target Start/End: Complemental strand, 45423916 - 45423768
Alignment:
Q  531 tttggtaattctactttcaaaagctattttcatttaaattatccaaacaacttgaattggtaaaaattcacttctatgtaaatatatcaaaacataaatc 630  Q
    |||||||||| ||| | ||||| | ||||| ||| ||  |||||||||||| ||||||| ||| ||| ||||| ||  | |||||||| ||||||||| |    
T  45423916 tttggtaattgtacatccaaaatcaattttgattcaagctatccaaacaacatgaattgataagaat-cacttttactttaatatatccaaacataaacc 45423818  T
Q  631 aattacattaaactcacttttagtcaaaataaattctatcaaaatcaatt 680  Q
    |||||  || ||||||||||||| |||||| |||||||||| ||||||||    
T  45423817 aattaagttcaactcacttttaggcaaaatcaattctatcagaatcaatt 45423768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 615 - 680
Target Start/End: Original strand, 31084243 - 31084309
Alignment:
Q  615 tatcaaaacataaatcaatt-acattaaactcacttttagtcaaaataaattctatcaaaatcaatt 680  Q
    |||| ||||||||||||||| ||||| |||||||||||| ||||||| |||||| ||||||||||||    
T  31084243 tatccaaacataaatcaattcacattcaactcacttttaatcaaaatcaattctttcaaaatcaatt 31084309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 615 - 681
Target Start/End: Complemental strand, 49526734 - 49526667
Alignment:
Q  615 tatcaaaacataaatcaatt-acattaaactcacttttagtcaaaataaattctatcaaaatcaattt 681  Q
    |||| ||||||||||||||| ||| | || ||||||||| ||||||| ||||||||||||||||||||    
T  49526734 tatccaaacataaatcaatttacaatcaattcacttttaatcaaaatcaattctatcaaaatcaattt 49526667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 613 - 680
Target Start/End: Complemental strand, 10853334 - 10853266
Alignment:
Q  613 tatatcaaaacataaatcaatt-acattaaactcacttttagtcaaaataaattctatcaaaatcaatt 680  Q
    |||||| ||||||||||||||| | ||||||||||||||||  |||||| |||||| ||||| ||||||    
T  10853334 tatatccaaacataaatcaatttatattaaactcacttttaaccaaaatcaattctctcaaactcaatt 10853266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 633 - 680
Target Start/End: Original strand, 25181265 - 25181311
Alignment:
Q  633 ttacattaaactcacttttagtcaaaataaattctatcaaaatcaatt 680  Q
    |||||||||||||||||||| ||||||| ||||||| |||||||||||    
T  25181265 ttacattaaactcacttttaatcaaaatcaattcta-caaaatcaatt 25181311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 620 - 682
Target Start/End: Complemental strand, 29252185 - 29252122
Alignment:
Q  620 aaacataaatcaatt-acattaaactcacttttagtcaaaataaattctatcaaaatcaatttt 682  Q
    ||||||||||||||| ||| | |||||||||||  ||||||| ||||| |||||||||||||||    
T  29252185 aaacataaatcaatttacaattaactcacttttgatcaaaatcaattcaatcaaaatcaatttt 29252122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 615 - 680
Target Start/End: Original strand, 23496353 - 23496419
Alignment:
Q  615 tatcaaaacataaatcaatt-acattaaactcacttttagtcaaaataaattctatcaaaatcaatt 680  Q
    |||| ||||||||||||||| ||||| ||||||||||||  |||||| |||||| ||||| ||||||    
T  23496353 tatccaaacataaatcaattcacattcaactcacttttaaccaaaatcaattctctcaaactcaatt 23496419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 615 - 680
Target Start/End: Original strand, 50664794 - 50664860
Alignment:
Q  615 tatcaaaacataaatcaatt-acattaaactcacttttagtcaaaataaattctatcaaaatcaatt 680  Q
    |||| ||||||||||||||| ||||| ||||||||||||  |||||| |||||| ||||| ||||||    
T  50664794 tatccaaacataaatcaattcacattcaactcacttttaaccaaaatcaattctctcaaactcaatt 50664860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 633 - 682
Target Start/End: Original strand, 51285681 - 51285730
Alignment:
Q  633 ttacattaaactcacttttagtcaaaataaattctatcaaaatcaatttt 682  Q
    ||||||| ||||||||||||| || |||||||||  ||||||||||||||    
T  51285681 ttacattcaactcacttttagccataataaattcactcaaaatcaatttt 51285730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 620 - 680
Target Start/End: Complemental strand, 52966869 - 52966808
Alignment:
Q  620 aaacataaatcaatt-acattaaactcacttttagtcaaaataaattctatcaaaatcaatt 680  Q
    ||||||||||||||| |||| ||| |||||||||  |||||| |||||| ||||||||||||    
T  52966869 aaacataaatcaattcacatcaaagtcacttttaaccaaaatcaattctctcaaaatcaatt 52966808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 115; Significance: 5e-58; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 508 - 706
Target Start/End: Complemental strand, 2071738 - 2071541
Alignment:
Q  508 tatataatataaatgatgtctaatttggtaattctactttcaaaagctattttcatttaaattatccaaacaacttgaattggtaaaaattcacttctat 607  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||||||||||||| ||||||| |||||||| |    
T  2071738 tatataatataaatgatgtctaatttggtaattatactttcaaaagctattttgattcaaattatccaaacaacttgaattagtaaaaa-tcacttcttt 2071640  T
Q  608 gtaaatatatcaaaacataaatcaattacattaaactcacttttagtcaaaataaattctatcaaaatcaattttcgtcactgcagaacttaacacaca 706  Q
     ||||| | || |||||| ||||||||||||| |||||||||||||||||||| |||||| |||||||||||| || || | |||||||  ||||||||    
T  2071639 ttaaatttttccaaacatgaatcaattacattcaactcacttttagtcaaaatcaattctgtcaaaatcaattctcatcgccgcagaaccaaacacaca 2071541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 508 - 682
Target Start/End: Complemental strand, 40792374 - 40792201
Alignment:
Q  508 tatataatataaatgatgtctaatttggtaattctactttcaaaagctattttcatttaaattatccaaacaacttgaattggtaaaaattcacttctat 607  Q
    |||||||||||| ||||||| |||||||||||| ||||||||||||||||||| ||  |||||||| ||| |||||||||||||||||| ||||||||||    
T  40792374 tatataatataattgatgtccaatttggtaattatactttcaaaagctattttgatccaaattatctaaataacttgaattggtaaaaa-tcacttctat 40792276  T
Q  608 gtaaatatatcaaaacataaatcaattacattaaactcacttttagtcaaaataaattctatcaaaatcaatttt 682  Q
    ||||||||||  ||| ||||||||||| |||| |||||||||||| ||||||| |||| ||||||||||||||||    
T  40792275 gtaaatatattcaaatataaatcaattgcattcaactcacttttaatcaaaatcaattatatcaaaatcaatttt 40792201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 654 - 710
Target Start/End: Complemental strand, 8130114 - 8130058
Alignment:
Q  654 tcaaaataaattctatcaaaatcaattttcgtcactgcagaacttaacacacattaa 710  Q
    ||||||| |||||||||||||||||||||  |||| |||||||| ||||||||||||    
T  8130114 tcaaaatcaattctatcaaaatcaatttttatcaccgcagaactaaacacacattaa 8130058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 570 - 680
Target Start/End: Original strand, 15206696 - 15206806
Alignment:
Q  570 tatccaaacaacttgaattggtaaaaattcacttctatgtaaatatatcaaaacataaatcaatt-acattaaactcacttttagtcaaaataaattcta 668  Q
    |||||||||||| ||||||  ||| ||| |||||||| || ||| |||| ||||||||||||||| ||||| ||||||||||||  |||||| |||| |     
T  15206696 tatccaaacaacatgaatttttaagaat-cacttctaagtcaatgtatccaaacataaatcaattcacattcaactcacttttacccaaaatcaattttg 15206794  T
Q  669 tcaaaatcaatt 680  Q
    ||||| ||||||    
T  15206795 tcaaactcaatt 15206806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 528 - 680
Target Start/End: Complemental strand, 6399259 - 6399107
Alignment:
Q  528 taatttggtaattctactttcaaaagctattttcatttaaattatccaaacaacttgaattggtaaaaattcacttctatgtaaatatatcaaaacataa 627  Q
    ||||||||| |||  || ||||||| | ||||| ||| |||||||||||||||| | || |  ||| ||| ||||| || || | | |||| ||||||||    
T  6399259 taatttggtcattgcacattcaaaatcaattttgattaaaattatccaaacaacatcaactcataagaat-cacttttaagtgagtgtatcgaaacataa 6399161  T
Q  628 atcaatt-acattaaactcacttttagtcaaaataaattctatcaaaatcaatt 680  Q
    ||||||| |||| |||||||||||||  || ||| |||||||||||| ||||||    
T  6399160 atcaattcacatcaaactcacttttaaccataatcaattctatcaaactcaatt 6399107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 598 - 682
Target Start/End: Original strand, 26490960 - 26491045
Alignment:
Q  598 tcacttctatgtaaatatatcaaaacataaatcaatt-acattaaactcacttttagtcaaaataaattctatcaaaatcaatttt 682  Q
    |||||||||| ||||  |||| ||||| ||||||||| ||| | ||||||||||||  |||||| ||||||| |||||||||||||    
T  26490960 tcacttctatataaaggtatccaaacacaaatcaatttacactcaactcacttttaaccaaaatcaattctaccaaaatcaatttt 26491045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 609 - 680
Target Start/End: Original strand, 3467571 - 3467643
Alignment:
Q  609 taaatatatcaaaacataaatcaatt-acattaaactcacttttagtcaaaataaattctatcaaaatcaatt 680  Q
    |||||||||| ||||| ||||||||| ||||| ||||||||||||  |||||| |||||| ||||| ||||||    
T  3467571 taaatatatccaaacagaaatcaattcacattcaactcacttttaaccaaaatcaattctctcaaactcaatt 3467643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 615 - 680
Target Start/End: Complemental strand, 4941846 - 4941780
Alignment:
Q  615 tatcaaaacataaatcaatt-acattaaactcacttttagtcaaaataaattctatcaaaatcaatt 680  Q
    |||| ||||||||||||||| || | ||||||||||||| ||||||| |||||| ||||| ||||||    
T  4941846 tatccaaacataaatcaattcacctcaaactcacttttaatcaaaatcaattctctcaaactcaatt 4941780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 615 - 680
Target Start/End: Complemental strand, 28425537 - 28425471
Alignment:
Q  615 tatcaaaacataaatcaatt-acattaaactcacttttagtcaaaataaattctatcaaaatcaatt 680  Q
    |||| ||||||||||||||| || | |||||||||||||  |||||| ||||||| |||||||||||    
T  28425537 tatccaaacataaatcaattcacctcaaactcacttttaaccaaaatcaattctaacaaaatcaatt 28425471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 615 - 680
Target Start/End: Complemental strand, 31246380 - 31246314
Alignment:
Q  615 tatcaaaacataaatcaatt-acattaaactcacttttagtcaaaataaattctatcaaaatcaatt 680  Q
    |||| ||||||||||||||| ||||| ||||||||||||   ||||| ||||||| |||||||||||    
T  31246380 tatccaaacataaatcaattcacattcaactcacttttaacaaaaatcaattctaacaaaatcaatt 31246314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 614 - 682
Target Start/End: Original strand, 39219764 - 39219833
Alignment:
Q  614 atatcaaaacataaatcaatt-acattaaactcacttttagtcaaaataaattctatcaaaatcaatttt 682  Q
    ||||| |||||||||||| || | ||||||||||||||||   ||||| |||||||||||||| ||||||    
T  39219764 atatccaaacataaatcacttcatattaaactcacttttaacgaaaatcaattctatcaaaattaatttt 39219833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 95; Significance: 4e-46; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 508 - 650
Target Start/End: Original strand, 3680713 - 3680854
Alignment:
Q  508 tatataatataaatgatgtctaatttggtaattctactttcaaaagctattttcatttaaattatccaaacaacttgaattggtaaaaattcacttctat 607  Q
    ||||||||||||||||||||||||||||||||| |||||||||||| |||||| ||| ||||||||||||||||||||||||||||||| ||||||||||    
T  3680713 tatataatataaatgatgtctaatttggtaattatactttcaaaaggtattttgattcaaattatccaaacaacttgaattggtaaaaa-tcacttctat 3680811  T
Q  608 gtaaatatatcaaaacataaatcaattacattaaactcacttt 650  Q
     |||||||||  |||||||||| ||||| ||| ||||||||||    
T  3680812 ataaatatattcaaacataaattaattaaattcaactcacttt 3680854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 556 - 680
Target Start/End: Complemental strand, 3602580 - 3602457
Alignment:
Q  556 attttcatttaaattatccaaacaacttgaattggtaaaaattcacttctatgtaaatatatcaaaacataaatcaattacattaaactcacttttagtc 655  Q
    ||||| ||| ||| |||||||||||| ||||||  ||||||| ||||| ||| | |||||||| |||||||| |||||||  || ||||||||||||| |    
T  3602580 attttaattcaaactatccaaacaacatgaattaataaaaat-cacttttattttaatatatccaaacataattcaattaagttcaactcacttttagac 3602482  T
Q  656 aaaataaattctatcaaaatcaatt 680  Q
    ||||| |||||||||||||||||||    
T  3602481 aaaatcaattctatcaaaatcaatt 3602457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 531 - 680
Target Start/End: Complemental strand, 25748027 - 25747879
Alignment:
Q  531 tttggtaattctactttcaaaagctattttcatttaaattatccaaacaacttgaattggtaaaaattcacttctatgtaaatatatcaaaacataaatc 630  Q
    |||| ||||| ||||||||||||| ||||| ||| ||| || ||||||||| | ||||| ||| ||| || || || || | | |||| |||||||||||    
T  25748027 tttgataattatactttcaaaagcaattttgattcaaactacccaaacaacataaattgataagaat-caattttaggttattgtatccaaacataaatc 25747929  T
Q  631 aattacattaaactcacttttagtcaaaataaattctatcaaaatcaatt 680  Q
    ||||||||| |||||||||||| ||||||| |||||| ||||| ||||||    
T  25747928 aattacattcaactcacttttaatcaaaatcaattctctcaaactcaatt 25747879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 546 - 680
Target Start/End: Original strand, 3853877 - 3854011
Alignment:
Q  546 ttcaaaagctattttcatttaaattatccaaacaacttgaattggtaaaaattcacttctatgtaaatatatcaaaacataaatcaatt-acattaaact 644  Q
    ||||||||| ||||| ||| ||| |||||||||||| |  |||| ||| ||| || || ||  | ||| |||| ||||||||||||||| ||||| ||||    
T  3853877 ttcaaaagcaattttgattcaaactatccaaacaacatagattgataagaat-caattttacatgaatgtatccaaacataaatcaatttacattcaact 3853975  T
Q  645 cacttttagtcaaaataaattctatcaaaatcaatt 680  Q
    |||||||| ||||||| |||||||||||||||||||    
T  3853976 cacttttaatcaaaatcaattctatcaaaatcaatt 3854011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 531 - 680
Target Start/End: Original strand, 8041242 - 8041389
Alignment:
Q  531 tttggtaattctactttcaaaagctattttcatttaaattatccaaacaacttgaattggtaaaaattcacttctatgtaaatatatcaaaacataaatc 630  Q
    |||| ||||| ||||||||||| | ||||| ||| ||| || ||||||||| | ||||| |||||||  | || || |||| |  ||| |||||||||||    
T  8041242 tttgataattatactttcaaaaacaattttgattcaaacta-ccaaacaacataaattgataaaaataaattt-taagtaattgcatccaaacataaatc 8041339  T
Q  631 aattacattaaactcacttttagtcaaaataaattctatcaaaatcaatt 680  Q
    ||||||||| || ||||||||| ||||||| |||||| ||||| ||||||    
T  8041340 aattacattcaattcacttttattcaaaatcaattctctcaaactcaatt 8041389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 613 - 680
Target Start/End: Original strand, 27911449 - 27911517
Alignment:
Q  613 tatatcaaaacataaatcaatt-acattaaactcacttttagtcaaaataaattctatcaaaatcaatt 680  Q
    |||||| ||||||||||||||| |||| |||||||||||||  |||| | |||||||||||||||||||    
T  27911449 tatatccaaacataaatcaattcacatcaaactcacttttaaccaaactcaattctatcaaaatcaatt 27911517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 615 - 680
Target Start/End: Complemental strand, 34433369 - 34433303
Alignment:
Q  615 tatcaaaacataaatcaatt-acattaaactcacttttagtcaaaataaattctatcaaaatcaatt 680  Q
    |||| ||||||||||||||| ||||| |||||||||||| ||||||| |||||| ||||| ||||||    
T  34433369 tatccaaacataaatcaattcacattcaactcacttttaatcaaaatcaattctgtcaaactcaatt 34433303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 615 - 682
Target Start/End: Original strand, 18511147 - 18511215
Alignment:
Q  615 tatcaaaacataaatcaatta-cattaaactcacttttagtcaaaataaattctatcaaaatcaatttt 682  Q
    |||| |||||||||||||||| |||| || |||||||||  |||||| |||| ||||||||||||||||    
T  18511147 tatccaaacataaatcaattaacatttaaatcacttttaaccaaaatcaattatatcaaaatcaatttt 18511215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 615 - 682
Target Start/End: Complemental strand, 23359993 - 23359925
Alignment:
Q  615 tatcaaaacataaatcaatt-acattaaactcacttttagtcaaaataaattctatcaaaatcaatttt 682  Q
    |||| |||||||||||| || ||||| ||||||||||||  |||||| ||||||| |||||||||||||    
T  23359993 tatccaaacataaatcactttacattcaactcacttttaaccaaaatcaattctaccaaaatcaatttt 23359925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 655 - 706
Target Start/End: Original strand, 12110974 - 12111025
Alignment:
Q  655 caaaataaattctatcaaaatcaattttcgtcactgcagaacttaacacaca 706  Q
    |||||| ||||||||||||||||||||||||||| ||| |||  ||||||||    
T  12110974 caaaatcaattctatcaaaatcaattttcgtcaccgcacaaccaaacacaca 12111025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 615 - 680
Target Start/End: Complemental strand, 1945102 - 1945036
Alignment:
Q  615 tatcaaaacataaatcaatt-acattaaactcacttttagtcaaaataaattctatcaaaatcaatt 680  Q
    |||| ||||||||||||||| ||||| ||||||||||||  |||||| |||||| ||||| ||||||    
T  1945102 tatccaaacataaatcaattcacattcaactcacttttaaccaaaatcaattctctcaaactcaatt 1945036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 654 - 688
Target Start/End: Complemental strand, 26207937 - 26207903
Alignment:
Q  654 tcaaaataaattctatcaaaatcaattttcgtcac 688  Q
    ||||||| |||||||||||||||||||||||||||    
T  26207937 tcaaaattaattctatcaaaatcaattttcgtcac 26207903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 615 - 680
Target Start/End: Original strand, 36548244 - 36548310
Alignment:
Q  615 tatcaaaacataaatcaatt-acattaaactcacttttagtcaaaataaattctatcaaaatcaatt 680  Q
    |||| ||||||||||||||| |||| | ||||||||||| ||||||| |||||| ||||| ||||||    
T  36548244 tatccaaacataaatcaattcacatcagactcacttttaatcaaaatcaattctctcaaactcaatt 36548310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 620 - 680
Target Start/End: Complemental strand, 30007611 - 30007550
Alignment:
Q  620 aaacataaatcaatt-acattaaactcacttttagtcaaaataaattctatcaaaatcaatt 680  Q
    ||||||||||||||| ||||| ||||||||||||  |||||| |||||| ||||| ||||||    
T  30007611 aaacataaatcaattcacattcaactcacttttaaccaaaattaattctctcaaactcaatt 30007550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 615 - 667
Target Start/End: Complemental strand, 42089591 - 42089538
Alignment:
Q  615 tatcaaaacataaatcaatt-acattaaactcacttttagtcaaaataaattct 667  Q
    |||| ||||||||||||||| ||||| |||||||||||| ||||||| ||||||    
T  42089591 tatccaaacataaatcaattcacattcaactcacttttaatcaaaatcaattct 42089538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 77; Significance: 2e-35; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 508 - 632
Target Start/End: Complemental strand, 44679403 - 44679280
Alignment:
Q  508 tatataatataaatgatgtctaatttggtaattctactttcaaaagctattttcatttaaattatccaaacaacttgaattggtaaaaattcacttctat 607  Q
    |||||||||||||||||||||||||||||||||  ||||| |||||||||||| ||| ||||||||||||||| |||||||||| |||| ||| ||||||    
T  44679403 tatataatataaatgatgtctaatttggtaattaaacttttaaaagctattttgattcaaattatccaaacaatttgaattggttaaaa-tcaattctat 44679305  T
Q  608 gtaaatatatcaaaacataaatcaa 632  Q
    ||||||||||  |||||||||||||    
T  44679304 gtaaatatatacaaacataaatcaa 44679280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 531 - 680
Target Start/End: Complemental strand, 40903302 - 40903154
Alignment:
Q  531 tttggtaattctactttcaaaagctattttcatttaaattatccaaacaacttgaattggtaaaaattcacttctatgtaaatatatcaaaacataaatc 630  Q
    |||||||||| ||| | ||||| | ||||| |||| || |||||||||||| ||||||| ||||||| ||||| ||  | |||||||| ||||||||| |    
T  40903302 tttggtaattatacatccaaaatcaattttgatttgaactatccaaacaacatgaattgataaaaat-cacttttactttaatatatccaaacataaacc 40903204  T
Q  631 aattacattaaactcacttttagtcaaaataaattctatcaaaatcaatt 680  Q
    |||||  || ||||||||||||| |||||| |||||||||||||||||||    
T  40903203 aattaagttcaactcacttttaggcaaaatcaattctatcaaaatcaatt 40903154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 528 - 680
Target Start/End: Original strand, 47021890 - 47022042
Alignment:
Q  528 taatttggtaattctactttcaaaagctattttcatttaaattatccaaacaacttgaattggtaaaaattcacttctatgtaaa-tatatcaaaacata 626  Q
    ||||||||| |||  || ||||||| | ||||||||| |||||||||||||||| | |||| |||| || |||| |||| ||||| | |||| |||||||    
T  47021890 taatttggtcattgcacattcaaaatcaattttcattcaaattatccaaacaacatcaattcgtaagaa-tcacatcta-gtaaagtgtatccaaacata 47021987  T
Q  627 aatcaatt-acattaaactcacttttagtcaaaataaattctatcaaaatcaatt 680  Q
    |||||||| || || |||| |||||||  |||||| |||||| ||||| ||||||    
T  47021988 aatcaattcactttcaacttacttttaaccaaaatcaattctctcaaactcaatt 47022042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 620 - 680
Target Start/End: Complemental strand, 47217588 - 47217527
Alignment:
Q  620 aaacataaatcaatt-acattaaactcacttttagtcaaaataaattctatcaaaatcaatt 680  Q
    ||||||||||||||| |||| ||||||||||||| ||||||| |||||| ||||| ||||||    
T  47217588 aaacataaatcaattcacatcaaactcacttttaatcaaaatcaattctctcaaactcaatt 47217527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 598 - 688
Target Start/End: Original strand, 45823245 - 45823337
Alignment:
Q  598 tcacttctat-gtaaatatatcaaaacataaatca-attacattaaactcacttttagtcaaaataaattctatcaaaatcaattttcgtcac 688  Q
    |||||||||| | |||| |||| |||||||||||| ||| |||| |||||||||||  || |||| ||||| ||||||||||||||| |||||    
T  45823245 tcacttctatcgaaaatgtatccaaacataaatcacatttcattcaactcacttttgatcgaaatcaattcaatcaaaatcaatttttgtcac 45823337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 598 - 680
Target Start/End: Original strand, 42740432 - 42740515
Alignment:
Q  598 tcacttctatgtaaatatatcaaaacataaatcaatt-acattaaactcacttttagtcaaaataaattctatcaaaatcaatt 680  Q
    |||||| || |||| |||||| ||||||||||||||| ||||| |||| |||||||  |||||| |||||| ||||| ||||||    
T  42740432 tcacttttaagtaagtatatctaaacataaatcaattaacattcaacttacttttaaccaaaatcaattctctcaaactcaatt 42740515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 598 - 680
Target Start/End: Original strand, 48459750 - 48459833
Alignment:
Q  598 tcacttctatgtaaatatatcaaaacataaatcaatt-acattaaactcacttttagtcaaaataaattctatcaaaatcaatt 680  Q
    |||||| || |||| | |||| ||||||||||||||| ||||| ||||||||||||  |||||| |||||| ||||| ||||||    
T  48459750 tcacttttaagtaagtgtatccaaacataaatcaattcacattcaactcacttttaaccaaaatcaattctctcaaactcaatt 48459833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 547 - 688
Target Start/End: Original strand, 1766415 - 1766556
Alignment:
Q  547 tcaaaagctattttcatttaaattatccaaacaacttgaattggtaaaaattcacttctatgtaaatatatcaaaacataaatcaatt-acattaaactc 645  Q
    |||||| | ||||| ||| ||||||| |||||| | | ||||| ||| ||| ||||| ||||| ||  |||| ||| ||||||||||| |  || |||||    
T  1766415 tcaaaatcaattttaattcaaattattcaaacatcatcaattgataagaat-cacttttatgttaaggtatccaaatataaatcaatttaggttcaactc 1766513  T
Q  646 acttttagtcaaaataaattctatcaaaatcaattttcgtcac 688  Q
    ||||||| ||||||| ||||  ||||||||||||| |||||||    
T  1766514 acttttaatcaaaatcaatttaatcaaaatcaattctcgtcac 1766556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 615 - 680
Target Start/End: Complemental strand, 39634217 - 39634151
Alignment:
Q  615 tatcaaaacataaatcaatt-acattaaactcacttttagtcaaaataaattctatcaaaatcaatt 680  Q
    |||| ||||||||||||||| | ||| ||||||||||||  |||||| ||||||| |||||||||||    
T  39634217 tatccaaacataaatcaattcatattcaactcacttttaaccaaaatcaattctaacaaaatcaatt 39634151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 615 - 680
Target Start/End: Complemental strand, 42752243 - 42752177
Alignment:
Q  615 tatcaaaacataaatcaatt-acattaaactcacttttagtcaaaataaattctatcaaaatcaatt 680  Q
    |||| ||||||||||||||| ||||| ||||||||||||   ||||| ||||||| |||||||||||    
T  42752243 tatccaaacataaatcaattcacattcaactcacttttaacaaaaatcaattctaacaaaatcaatt 42752177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 547 - 680
Target Start/End: Complemental strand, 44967518 - 44967385
Alignment:
Q  547 tcaaaagctattttcatttaaattatccaaacaacttgaattggtaaaaattcacttctatgtaaatatatcaaaacataaatcaatt-acattaaactc 645  Q
    |||||| | ||||| ||| |||||||||||||||| | || |  ||| ||| |||||||||  || | |||  ||||||||||||||| ||||| |||||    
T  44967518 tcaaaatcaattttgattcaaattatccaaacaacatcaactcataagaat-cacttctattaaagtgtattcaaacataaatcaattcacattcaactc 44967420  T
Q  646 acttttagtcaaaataaattctatcaaaatcaatt 680  Q
    |||||||  |||||| |||||| ||||| ||||||    
T  44967419 acttttaaccaaaatcaattctctcaaactcaatt 44967385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 556 - 680
Target Start/End: Complemental strand, 3622570 - 3622446
Alignment:
Q  556 attttcatttaaattatccaaacaacttgaattggtaaaaattcacttctatgtaaatatatcaaaacataaatcaatt-acattaaactcacttttagt 654  Q
    ||||| ||||| | |||||||||||| | || | |||| ||| ||||| || |||| | |||| ||||||||||||||| ||||  ||||||||||||      
T  3622570 attttgatttatactatccaaacaacatcaactcgtaagaat-cacttttaagtaagtgtatccaaacataaatcaattcacatccaactcacttttaac 3622472  T
Q  655 caaaataaattctatcaaaatcaatt 680  Q
    |||||| |||||| ||||| ||||||    
T  3622471 caaaatcaattctctcaaactcaatt 3622446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 620 - 680
Target Start/End: Complemental strand, 10372005 - 10371944
Alignment:
Q  620 aaacataaatcaatt-acattaaactcacttttagtcaaaataaattctatcaaaatcaatt 680  Q
    ||||||||||||||| ||||| ||||||||||||  |||||| |||||| ||||| ||||||    
T  10372005 aaacataaatcaattcacattcaactcacttttaaccaaaatcaattctctcaaactcaatt 10371944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 620 - 680
Target Start/End: Original strand, 41715719 - 41715780
Alignment:
Q  620 aaacataaatcaatt-acattaaactcacttttagtcaaaataaattctatcaaaatcaatt 680  Q
    ||||||||||||||| ||||  |||||||||||| ||||||| |||||| | ||||||||||    
T  41715719 aaacataaatcaatttacatctaactcacttttaatcaaaatcaattctcttaaaatcaatt 41715780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 74; Significance: 1e-33; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 519 - 680
Target Start/End: Complemental strand, 46581345 - 46581185
Alignment:
Q  519 aatgatgtctaatttggtaattctactttcaaaagctattttcatttaaattatccaaacaacttgaattggtaaaaattcacttctatgtaaatatatc 618  Q
    ||||||||||||||| |||||| ||| |||||||   ||||| ||| ||||||||||||||||||||||||||||||| ||| ||| |  ||||| ||||    
T  46581345 aatgatgtctaattttgtaattatacattcaaaaataattttgattcaaattatccaaacaacttgaattggtaaaaa-tcaattcaacataaatttatc 46581247  T
Q  619 aaaacataaatcaattacattaaactcacttttagtcaaaataaattctatcaaaatcaatt 680  Q
    ||||||||||| ||||||||| |||||||||||||||| ||| || | | ||||||||||||    
T  46581246 aaaacataaatgaattacattcaactcacttttagtcagaatcaaatttgtcaaaatcaatt 46581185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 615 - 680
Target Start/End: Complemental strand, 23628771 - 23628706
Alignment:
Q  615 tatcaaaacataaatcaattacattaaactcacttttagtcaaaataaattctatcaaaatcaatt 680  Q
    |||| |||||||||||||||||||| |||||||||||||||||||| |||| | ||||| ||||||    
T  23628771 tatccaaacataaatcaattacattcaactcacttttagtcaaaatcaattatctcaaactcaatt 23628706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 620 - 680
Target Start/End: Original strand, 47085898 - 47085959
Alignment:
Q  620 aaacataaatcaatt-acattaaactcacttttagtcaaaataaattctatcaaaatcaatt 680  Q
    ||||||||||||||| ||||| |||||||||||| | ||||| |||||||||||||||||||    
T  47085898 aaacataaatcaattcacattcaactcacttttaattaaaatcaattctatcaaaatcaatt 47085959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 615 - 680
Target Start/End: Complemental strand, 20800343 - 20800277
Alignment:
Q  615 tatcaaaacataaatcaatt-acattaaactcacttttagtcaaaataaattctatcaaaatcaatt 680  Q
    |||| ||||||||||||||| ||||| ||||||||||||  |||||| |||||| ||||||||||||    
T  20800343 tatccaaacataaatcaattcacattcaactcacttttaaccaaaatcaattctctcaaaatcaatt 20800277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 615 - 680
Target Start/End: Complemental strand, 35569268 - 35569202
Alignment:
Q  615 tatcaaaacataaatcaatt-acattaaactcacttttagtcaaaataaattctatcaaaatcaatt 680  Q
    |||| ||||||||||||||| ||||| ||||||||||||  |||||| |||||| ||||||||||||    
T  35569268 tatccaaacataaatcaattcacattcaactcacttttaaccaaaatcaattctctcaaaatcaatt 35569202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 633 - 696
Target Start/End: Complemental strand, 6932158 - 6932095
Alignment:
Q  633 ttacattaaactcacttttagtcaaaataaattctatcaaaatcaattttcgtcactgcagaac 696  Q
    ||||||| |||||||||||||||| ||| |||||  |||||||||| ||| ||||| |||||||    
T  6932158 ttacattcaactcacttttagtcagaatcaattcattcaaaatcaaattttgtcaccgcagaac 6932095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 556 - 682
Target Start/End: Original strand, 25061228 - 25061354
Alignment:
Q  556 attttcatttaaattatccaaacaacttgaattggtaaaaattcacttctatgtaaatatatcaaaacataaatcaatt-acattaaactcacttttagt 654  Q
    ||||| ||| |||||||||||||| | | ||||| ||| ||| ||||| ||||| ||  |||| ||||||||||||||| |  || ||||||||||||      
T  25061228 attttgattcaaattatccaaacatcatcaattgataagaat-cacttttatgttaaggtatccaaacataaatcaatttatgttcaactcacttttaac 25061326  T
Q  655 caaaataaattctatcaaaatcaatttt 682  Q
    |||||| ||||| | |||||||||||||    
T  25061327 caaaatcaattcaaccaaaatcaatttt 25061354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 615 - 680
Target Start/End: Original strand, 1199887 - 1199953
Alignment:
Q  615 tatcaaaacataaatcaatt-acattaaactcacttttagtcaaaataaattctatcaaaatcaatt 680  Q
    |||| ||||||||||||||| ||||| ||||||||||||  |||||| |||||| ||||| ||||||    
T  1199887 tatccaaacataaatcaattcacattcaactcacttttaaccaaaattaattctctcaaactcaatt 1199953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 615 - 669
Target Start/End: Original strand, 40709236 - 40709290
Alignment:
Q  615 tatcaaaacataaatcaattacattaaactcacttttagtcaaaataaattctat 669  Q
    |||| |||||||||||||||||| | |||||||| ||| ||||||| ||||||||    
T  40709236 tatccaaacataaatcaattacactcaactcactattaatcaaaatcaattctat 40709290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 620 - 680
Target Start/End: Original strand, 5410704 - 5410765
Alignment:
Q  620 aaacataaatcaatt-acattaaactcacttttagtcaaaataaattctatcaaaatcaatt 680  Q
    ||||||||||||||| ||||  |||||||||||| ||||||| |||||| ||||| ||||||    
T  5410704 aaacataaatcaatttacatccaactcacttttaatcaaaatcaattctttcaaattcaatt 5410765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 620 - 680
Target Start/End: Complemental strand, 7826415 - 7826354
Alignment:
Q  620 aaacataaatcaatt-acattaaactcacttttagtcaaaataaattctatcaaaatcaatt 680  Q
    ||||||||||||||| |||| || ||||||||||  |||||| |||||| ||||||||||||    
T  7826415 aaacataaatcaattcacatcaagctcacttttaaccaaaatcaattctctcaaaatcaatt 7826354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 620 - 680
Target Start/End: Complemental strand, 27801713 - 27801652
Alignment:
Q  620 aaacataaatcaatt-acattaaactcacttttagtcaaaataaattctatcaaaatcaatt 680  Q
    ||||||||||||||| ||||  |||||||||||| ||||||| |||||| | ||||||||||    
T  27801713 aaacataaatcaatttacatctaactcacttttaatcaaaatcaattctcttaaaatcaatt 27801652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 633 - 706
Target Start/End: Complemental strand, 34571157 - 34571084
Alignment:
Q  633 ttacattaaactcacttttagtcaaaataaattctatcaaaatcaattttcgtcactgcagaacttaacacaca 706  Q
    ||||||| |||||||||||| ||| ||| |||| ||| |||||||||||| ||||| ||| |||  ||||||||    
T  34571157 ttacattcaactcacttttaatcagaatcaattttatgaaaatcaatttttgtcaccgcataaccaaacacaca 34571084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 58; Significance: 5e-24; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 531 - 680
Target Start/End: Original strand, 46716 - 46864
Alignment:
Q  531 tttggtaattctactttcaaaagctattttcatttaaattatccaaacaacttgaattggtaaaaattcacttctatgtaaatatatcaaaacataaatc 630  Q
    |||||||||| ||| | ||||| | ||||| |||| || |||||||||||| ||||||| ||||||| ||||| ||  | |||||||| ||||||||| |    
T  46716 tttggtaattatacatccaaaatcaattttgatttgaactatccaaacaacatgaattgataaaaat-cacttttactttaatatatccaaacataaacc 46814  T
Q  631 aattacattaaactcacttttagtcaaaataaattctatcaaaatcaatt 680  Q
    |||||  || ||||||||||||| |||||| |||||||||||||||||||    
T  46815 aattaagttcaactcacttttaggcaaaatcaattctatcaaaatcaatt 46864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 5e-24; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 531 - 680
Target Start/End: Original strand, 7178745 - 7178893
Alignment:
Q  531 tttggtaattctactttcaaaagctattttcatttaaattatccaaacaacttgaattggtaaaaattcacttctatgtaaatatatcaaaacataaatc 630  Q
    |||||||||| ||||||||||||| ||||| ||| ||| || ||||||||| | ||||| ||| ||| || || || || | | |||| |||||||||||    
T  7178745 tttggtaattatactttcaaaagcaattttgattcaaactacccaaacaacataaattgataagaat-caattttaggttattgtatccaaacataaatc 7178843  T
Q  631 aattacattaaactcacttttagtcaaaataaattctatcaaaatcaatt 680  Q
    ||||||||| |||||||||||||||||||| |||||| ||||| ||||||    
T  7178844 aattacattcaactcacttttagtcaaaattaattctctcaaactcaatt 7178893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 615 - 680
Target Start/End: Original strand, 22482239 - 22482305
Alignment:
Q  615 tatcaaaacataaatcaatt-acattaaactcacttttagtcaaaataaattctatcaaaatcaatt 680  Q
    |||| ||||||||||||||| ||||| ||||||||||||  |||||| |||||| ||||||||||||    
T  22482239 tatccaaacataaatcaattcacattcaactcacttttaaccaaaatcaattctctcaaaatcaatt 22482305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 620 - 680
Target Start/End: Original strand, 24036628 - 24036689
Alignment:
Q  620 aaacataaatcaatt-acattaaactcacttttagtcaaaataaattctatcaaaatcaatt 680  Q
    |||||||||||| || ||||| |||||||||||  ||||||| |||||||||||||||||||    
T  24036628 aaacataaatcattttacattcaactcacttttcatcaaaatcaattctatcaaaatcaatt 24036689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 528 - 673
Target Start/End: Original strand, 41834856 - 41835001
Alignment:
Q  528 taatttggtaattctactttcaaaagctattttcatttaaattatccaaacaacttgaattggtaaaaattcacttctatgtaaa-tatatcaaaacata 626  Q
    ||||||||| |||  || ||||||| | ||||||||| ||| |||||||||||| | |||| |||| || ||||||||| ||||| | |||| |||||||    
T  41834856 taatttggtcattgcacattcaaaatcaattttcattcaaactatccaaacaacatcaattcgtaagaa-tcacttcta-gtaaagtgtatccaaacata 41834953  T
Q  627 aatcaatt-acattaaactcacttttagtcaaaataaattctatcaaa 673  Q
    |||||||| || |  ||||||||||||  |||||| |||||| |||||    
T  41834954 aatcaattcacttccaactcacttttaaccaaaatcaattctctcaaa 41835001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 615 - 680
Target Start/End: Complemental strand, 40495420 - 40495354
Alignment:
Q  615 tatcaaaacataaatcaatt-acattaaactcacttttagtcaaaataaattctatcaaaatcaatt 680  Q
    |||| ||||||||||||||| |||| |||||||||||||  |||||| |||| ||||||| ||||||    
T  40495420 tatccaaacataaatcaatttacatcaaactcacttttaaccaaaatcaattatatcaaactcaatt 40495354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 609 - 706
Target Start/End: Original strand, 36150619 - 36150717
Alignment:
Q  609 taaatatatcaaaacataaatcaatt-acattaaactcacttttagtcaaaataaattctatcaaaatcaattttcgtcactgcagaacttaacacaca 706  Q
    |||| ||||| |||||||||||| || ||||| |||||||||||| ||||||| |||| |||||||||||||| ||||||| ||| |||  ||||||||    
T  36150619 taaaaatatccaaacataaatcactttacattcaactcacttttaatcaaaatcaattatatcaaaatcaattctcgtcaccgcacaaccaaacacaca 36150717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 531 - 680
Target Start/End: Complemental strand, 19599642 - 19599495
Alignment:
Q  531 tttggtaattctactttcaaaagctattttcatttaaattatccaaacaacttgaattggtaaaaattcacttctatgtaaatatatcaaaacataaatc 630  Q
    |||||||||| ||||| ||||||| ||||| |||  || || ||||||||| | ||||| ||| ||| || || || |||| |  ||| |||||||||||    
T  19599642 tttggtaattatacttccaaaagcaattttgattctaaata-ccaaacaacataaattgataagaat-caattttaagtaattgcatccaaacataaatc 19599545  T
Q  631 aattacattaaactcacttttagtcaaaataaattctatcaaaatcaatt 680  Q
    ||||||||| |||||||||||| ||||||| |||||| ||||| ||||||    
T  19599544 aattacattcaactcacttttattcaaaatcaattctctcaaactcaatt 19599495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 598 - 680
Target Start/End: Complemental strand, 42944980 - 42944897
Alignment:
Q  598 tcacttctatgtaaatatatcaaaacataaatcaatt-acattaaactcacttttagtcaaaataaattctatcaaaatcaatt 680  Q
    |||||| || |||| |||||| ||||||||||||||| ||||| ||||||||||||  |||||| |||||| ||||||||||||    
T  42944980 tcacttttaagtaagtatatctaaacataaatcaattcacattcaactcacttttaaccaaaatcaattctctcaaaatcaatt 42944897  T

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Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 615 - 660
Target Start/End: Original strand, 53914920 - 53914965
Alignment:
Q  615 tatcaaaacataaatcaattacattaaactcacttttagtcaaaat 660  Q
    |||| |||||||||||||||||||| ||||||||||||||||||||    
T  53914920 tatccaaacataaatcaattacattcaactcacttttagtcaaaat 53914965  T

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Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 620 - 683
Target Start/End: Complemental strand, 4954111 - 4954047
Alignment:
Q  620 aaacataaatcaatt-acattaaactcacttttagtcaaaataaattctatcaaaatcaattttc 683  Q
    ||||||||||||||| |||| |||||||||||||  |||||| |||||| |||||||||||||||    
T  4954111 aaacataaatcaattcacatcaaactcacttttaaccaaaatcaattctctcaaaatcaattttc 4954047  T

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Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 598 - 680
Target Start/End: Complemental strand, 48550509 - 48550426
Alignment:
Q  598 tcacttctatgtaaatatatcaaaacataaatcaatt-acattaaactcacttttagtcaaaataaattctatcaaaatcaatt 680  Q
    ||||||||||  || | |||| ||||||||||||||| ||||  ||||||||||||  |||||| |||||||||||||||||||    
T  48550509 tcacttctattaaagtttatccaaacataaatcaattcacatccaactcacttttaaccaaaatcaattctatcaaaatcaatt 48550426  T

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Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 611 - 687
Target Start/End: Original strand, 33843799 - 33843876
Alignment:
Q  611 aatatatcaaaacataaatcaatt-acattaaactcacttttagtcaaaataaattctatcaaaatcaattttcgtca 687  Q
    |||||||| |||||||||||| || ||||  ||||||||||||| || ||| ||||| ||||||||||||||| ||||    
T  33843799 aatatatccaaacataaatcactttacatccaactcacttttagccagaatcaattcaatcaaaatcaatttttgtca 33843876  T

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Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 615 - 682
Target Start/End: Complemental strand, 54487285 - 54487217
Alignment:
Q  615 tatcaaaacataaatcaatt-acattaaactcacttttagtcaaaataaattctatcaaaatcaatttt 682  Q
    |||| ||||||||||||||| ||||| |||||||||||  || |||| |||||||||||| ||||||||    
T  54487285 tatccaaacataaatcaatttacattcaactcacttttgatcgaaatcaattctatcaaactcaatttt 54487217  T

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Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 598 - 680
Target Start/End: Original strand, 39636789 - 39636872
Alignment:
Q  598 tcacttctatgtaaatatatcaaaacataaatcaatt-acattaaactcacttttagtcaaaataaattctatcaaaatcaatt 680  Q
    |||||| || |||| | |||| ||||||||||||||| ||||  |||||||||||| ||||||| |||||| ||||| ||||||    
T  39636789 tcacttttaagtaagtgtatccaaacataaatcaattcacatccaactcacttttaatcaaaatcaattctctcaaactcaatt 39636872  T

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Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 615 - 680
Target Start/End: Original strand, 16566326 - 16566392
Alignment:
Q  615 tatcaaaacataaatcaatt-acattaaactcacttttagtcaaaataaattctatcaaaatcaatt 680  Q
    |||| ||||||||||||||| ||||| ||||||||||||  |||||| |||||| ||||| ||||||    
T  16566326 tatccaaacataaatcaattcacattcaactcacttttaaccaaaatcaattctctcaaactcaatt 16566392  T

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Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 528 - 680
Target Start/End: Complemental strand, 19592382 - 19592230
Alignment:
Q  528 taatttggtaattctactttcaaaagctattttcatttaaattatccaaacaacttgaattggtaaaaattcacttctatgtaaa-tatatcaaaacata 626  Q
    ||||||||| ||| ||| ||||||| | ||||||||| ||| |||||||||||| | |||| |||| || |||||| || ||||| | |||| |||||||    
T  19592382 taatttggtcattgtacattcaaaatcaattttcattcaaactatccaaacaacgtcaattcgtaagaa-tcactttta-gtaaagtgtatccaaacata 19592285  T
Q  627 aatcaatt-acattaaactcacttttagtcaaaataaattctatcaaaatcaatt 680  Q
    |||||||| || |  ||||||||||||  |||||| |||||| | ||| ||||||    
T  19592284 aatcaattcacttccaactcacttttaaccaaaatcaattctctaaaactcaatt 19592230  T

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Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 615 - 652
Target Start/End: Original strand, 8754179 - 8754216
Alignment:
Q  615 tatcaaaacataaatcaattacattaaactcactttta 652  Q
    |||| |||||||||||||||||||| ||||||||||||    
T  8754179 tatccaaacataaatcaattacattcaactcactttta 8754216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 620 - 680
Target Start/End: Original strand, 33574204 - 33574265
Alignment:
Q  620 aaacataaatcaatt-acattaaactcacttttagtcaaaataaattctatcaaaatcaatt 680  Q
    ||||||||||||||| ||||| ||||||||||||  |||||| |||||| ||||| ||||||    
T  33574204 aaacataaatcaattcacattcaactcacttttaaccaaaattaattctctcaaactcaatt 33574265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 641 - 682
Target Start/End: Original strand, 46958071 - 46958112
Alignment:
Q  641 aactcacttttagtcaaaataaattctatcaaaatcaatttt 682  Q
    ||||||||||||  |||||| |||||||||||||||||||||    
T  46958071 aactcacttttaaccaaaatcaattctatcaaaatcaatttt 46958112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 620 - 680
Target Start/End: Original strand, 48550243 - 48550304
Alignment:
Q  620 aaacataaatcaatt-acattaaactcacttttagtcaaaataaattctatcaaaatcaatt 680  Q
    ||||||||||||||| ||||  |||||||||||| ||||||| |||||| | ||||||||||    
T  48550243 aaacataaatcaatttacatctaactcacttttaatcaaaatcaattctcttaaaatcaatt 48550304  T

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Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 620 - 680
Target Start/End: Original strand, 54488631 - 54488692
Alignment:
Q  620 aaacataaatcaatt-acattaaactcacttttagtcaaaataaattctatcaaaatcaatt 680  Q
    ||||||||||||||| ||||| ||||||||||||   ||||| ||||||| |||||||||||    
T  54488631 aaacataaatcaattcacattcaactcacttttaacaaaaatcaattctaacaaaatcaatt 54488692  T

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Target: scaffold0172 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 655 - 706
Target Start/End: Complemental strand, 15267 - 15216
Alignment:
Q  655 caaaataaattctatcaaaatcaattttcgtcactgcagaacttaacacaca 706  Q
    |||||| ||||||||||||||||||||||||||| ||| |||  ||||||||    
T  15267 caaaatcaattctatcaaaatcaattttcgtcaccgcacaaccaaacacaca 15216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0369 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0369
Description:

Target: scaffold0369; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 615 - 680
Target Start/End: Original strand, 8485 - 8551
Alignment:
Q  615 tatcaaaacataaatcaatt-acattaaactcacttttagtcaaaataaattctatcaaaatcaatt 680  Q
    |||| ||||||||||||||| |||| |||||||||||||  |||||| |||| ||||||| ||||||    
T  8485 tatccaaacataaatcaattcacatcaaactcacttttaaccaaaatcaattatatcaaactcaatt 8551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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