View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1936_low_20 (Length: 299)
Name: NF1936_low_20
Description: NF1936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1936_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 9 - 282
Target Start/End: Complemental strand, 54918930 - 54918657
Alignment:
| Q |
9 |
ccttgaaaaatggaagtagtctaatgagtacaattattgagttaacattggaaaatgatagtagttcaatgagtacaaatttccaacgagaattgaatga |
108 |
Q |
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| T |
54918930 |
ccttgaaaaatgaaagtagtctaatgagtacaattattgagttagcattggaaaatgatagtagttcaatgagtacaaatttccaatgagaattgaaaga |
54918831 |
T |
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| Q |
109 |
tgataccttggaaaatggcattaaggattctatgcacagaaaaatggttttatattttttgttctatatatagttttggttcatgtcaaaataaaccaca |
208 |
Q |
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| T |
54918830 |
tgataccttggaaaatggcattaaggattctatgcacagaaaaatggttttatattttttgttctatatatagttttggttcatgtcaaaataaaccaca |
54918731 |
T |
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| Q |
209 |
aaactgtttcattcctcaagcgcgtttcatttttcttcctctgtcagtctcacataaacagtgttggtattttt |
282 |
Q |
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| T |
54918730 |
aaactgtttcatccctcaagcgcgtttcatttttcttcctctgtcaatgtcacataaacagtgttggtattttt |
54918657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 54921994 - 54921930
Alignment:
| Q |
1 |
cgattaacccttgaaaaatggaagtagtctaatgagtacaattattgagttaacattggaaaatg |
65 |
Q |
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| T |
54921994 |
cgattaagccttggaaaatggtagtagtctaatgactacaattatggagttagcattggaaaatg |
54921930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 137
Target Start/End: Complemental strand, 54922227 - 54922126
Alignment:
| Q |
36 |
gtacaattattgagttaacattggaaaatgatagtagttcaatgagtacaaatttccaacgagaattgaatgatgataccttggaaaatggcattaagga |
135 |
Q |
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| T |
54922227 |
gtacaatttgtgagttagaattggaaaatgatagtagtataatgagagtaaatttcaaatgagtgatgaatgattaaactttggaaaatgacattaagga |
54922128 |
T |
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| Q |
136 |
tt |
137 |
Q |
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|| |
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|
| T |
54922127 |
tt |
54922126 |
T |
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