View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1936_low_21 (Length: 295)
Name: NF1936_low_21
Description: NF1936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1936_low_21 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 18 - 272
Target Start/End: Complemental strand, 152916 - 152662
Alignment:
| Q |
18 |
agactaatctctactagggtgtttaggttgcaaatcaaagctcatcacttgtctgagagtatagtacgtagggatctcatattattatttgcttttacaa |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
152916 |
agactaatctctactagggtgtttaggttgcaaatcaaagcccatcacttgtctgagagtatagtatgtagggatctcatattattatttgcttttacaa |
152817 |
T |
|
| Q |
118 |
tcaaattattcttcccttcgaatactaatcaattctacctaaaaactttatctttctccatatcacattaatgttctactcttaaatgaatcaatttcgg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
152816 |
tcaaattattcttcccttcgaatactaatcaattctacctaaaaactttatctttctccatatcacattaatgttctactcttaaatgaatcaatttcgg |
152717 |
T |
|
| Q |
218 |
atcatattacattaaaatattgtctgagattgaattcttataaatatcttctaag |
272 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
152716 |
atcatattacattaaaatattgtctgagattgaattcttataaatatcttctaag |
152662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University