View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1936_low_23 (Length: 273)
Name: NF1936_low_23
Description: NF1936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1936_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 38860417 - 38860673
Alignment:
| Q |
1 |
ttgttatgttaaaacaaatttgcatttcttccacatgctacaaaataaatggcagaaaaagatgttactactcaccacaatattgccacctgggagtaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38860417 |
ttgttatgttaaaacaaatttgcatttcttccacatgctacaaaataaatggcagaaaaagatgttactactcaccacaatattgccacctgggagtaaa |
38860516 |
T |
|
| Q |
101 |
gtaattggcttactgattttgtagtctccaccttgcaaatcaataataacacctcccaaatcattcacccctgctaccaattgaagacccttttgcaact |
200 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38860517 |
gtaatcggcttactgattttgtagtctccaccttgcaaatcaataataacacctcccaaatcattcacccctgctaccaattgaagacccttttgcaact |
38860616 |
T |
|
| Q |
201 |
taaatgcatcctccactactttcaaaatggcatcactactctcttctgatcctgttg |
257 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38860617 |
taaatgcatcctccactactttcaaaatggcatcactactctcttctgatcctgttg |
38860673 |
T |
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