View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1936_low_24 (Length: 270)
Name: NF1936_low_24
Description: NF1936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1936_low_24 |
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Alignment Details
Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 20 - 231
Target Start/End: Original strand, 6634423 - 6634634
Alignment:
| Q |
20 |
catcattcttagcctcaacaaagtagaaaaagagtgcttttttgttttgatcatcaacatttacataacctgaaaagtgatgaaaatcaacatgtggttg |
119 |
Q |
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| T |
6634423 |
catcattcttagcctcaacaaagtagaaaaagagtgcttttttgttttgatcatcaacatttacataacctgaaaactgatgaaaatcaacatgtggttg |
6634522 |
T |
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| Q |
120 |
accaggtaaatttgtgatcttattagggtgtgaaactgcaaaggaacattggtgaagcataattgcagcaacacacattgcaatagaacaacaaagtaga |
219 |
Q |
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| T |
6634523 |
accaggtaaatttgtgatcttattagggtgtgaaactgcaaaggaacattggtgaagtataattgcagcaacacacattgcaatagaacaacaaagtaga |
6634622 |
T |
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| Q |
220 |
aaagacatggtt |
231 |
Q |
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|||||||||||| |
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| T |
6634623 |
aaagacatggtt |
6634634 |
T |
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