View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1936_low_27 (Length: 265)
Name: NF1936_low_27
Description: NF1936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1936_low_27 |
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Alignment Details
Target: chr6 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 15 - 254
Target Start/End: Original strand, 8715575 - 8715814
Alignment:
| Q |
15 |
caatagttgccgatgtttgttagtacatggaatcagcttgtggattatacaaccgcattaagcaaccaagcctgaaccacaaaatgtgtactatcaatcg |
114 |
Q |
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| T |
8715575 |
caatagttgccgatgtttattagtacatggaatcagcttgtggattatacaaccgcatcaagcaaccaagcctgaaccacaaaatgtgtactatcaatcg |
8715674 |
T |
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| Q |
115 |
ttgtgttggtaacatagaatgaacaatcaagtatataaaaacacttccttagtgttccgtgttttgacgagcagggattaaccaaaataacctgaaaata |
214 |
Q |
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| T |
8715675 |
tcgtgttggtaacatagaatgaacaaccaagtatataaaaacacttccttagtgttccgtgttttgacgagcaggaattaaccaaaataacctgaaaata |
8715774 |
T |
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| Q |
215 |
aattttttagctcataaaaaattgacagacatggtttctt |
254 |
Q |
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| T |
8715775 |
aattttttagctcataaaaaattgacagacatggtttctt |
8715814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 15 - 182
Target Start/End: Complemental strand, 5968572 - 5968406
Alignment:
| Q |
15 |
caatagttgccgatgtttgttagtacatggaatcagcttgtggattatacaaccgcattaagcaaccaagcctgaaccacaaaatgtgtactatcaatcg |
114 |
Q |
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| T |
5968572 |
caatagttgccgatgtttattagtacgtggaatcagcttgtggattatacaaccacattaagaaaccaagcctaaacca-aaaatttatactatcaatcg |
5968474 |
T |
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| Q |
115 |
ttgtgttggtaacatagaatgaacaatcaagtatataaaaacacttccttagtgttccgtgttttgac |
182 |
Q |
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| T |
5968473 |
tcgtgttggtaacatagaatgaacaaccaagtatataaaaacacttccttagtgttccgtgttttgac |
5968406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 191 - 241
Target Start/End: Complemental strand, 5968382 - 5968332
Alignment:
| Q |
191 |
attaaccaaaataacctgaaaataaattttttagctcataaaaaattgaca |
241 |
Q |
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| T |
5968382 |
attaaccaaaataatctgaaaatcaattttgtagctcataaaaaattgaca |
5968332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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