View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1936_low_28 (Length: 256)
Name: NF1936_low_28
Description: NF1936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1936_low_28 |
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Alignment Details
Target: chr8 (Bit Score: 226; Significance: 1e-125; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 17 - 250
Target Start/End: Complemental strand, 36472801 - 36472568
Alignment:
| Q |
17 |
cttttgttttgaaacagaattacacaacaacttgctcgttgatatattggatattgaatctacttcaggtatatatataatttatagatctatatagaag |
116 |
Q |
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| T |
36472801 |
cttttgttttgaaacagaattacacaacaacttgctcgttgatatattggatattgaatctacttcaggtatatatataatttatagatctatatagaag |
36472702 |
T |
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| Q |
117 |
aattaaatagctagaaactcaaagttgtatgcaactaattaatctataaaacgcaccaatacttcaaattgaaggatcattcggtttctagcaccgacat |
216 |
Q |
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| T |
36472701 |
aattaaatagctagaaactcaaagttgtatgcaactaattaatctataaaacgcaccaatacttcaaattgaaggatcattcagtttctagcaccgatat |
36472602 |
T |
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| Q |
217 |
gattttggtctaattcaattacttttcttttctc |
250 |
Q |
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| T |
36472601 |
gattttggtctaattcaattacttttcttttctc |
36472568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 17 - 87
Target Start/End: Complemental strand, 36463668 - 36463599
Alignment:
| Q |
17 |
cttttgttttgaaacagaattacacaacaacttgctcgttgatatattggatattgaatctacttcaggta |
87 |
Q |
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||||||||||||| |||| ||| |||| ||||||||| || |||||||||||||||||||||||||||| |
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| T |
36463668 |
cttttgttttgaa-cagagttatacaataacttgctctgtggcatattggatattgaatctacttcaggta |
36463599 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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