View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1936_low_29 (Length: 255)
Name: NF1936_low_29
Description: NF1936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1936_low_29 |
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Alignment Details
Target: chr8 (Bit Score: 220; Significance: 1e-121; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 13 - 236
Target Start/End: Complemental strand, 4163950 - 4163727
Alignment:
| Q |
13 |
aatatatggattgcaaacagagatcaaccactcaaggattcaaatggaatagtcacaattcacaaaaatggaaatcttgtaatattgaacaaagaaaatg |
112 |
Q |
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| T |
4163950 |
aatatatggattgcaaacagagatcaaccactcaaggattcaaatggaatagtcacaattcacaaaaatggaaatcttgtaatattgaacaaagaaaatg |
4163851 |
T |
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| Q |
113 |
gtagcatcatttggtcaacaagcatttcaagtccaaattcaataaattccacagctcaacttgttgatgtaggaaacttgattctaagtgacatcaattc |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4163850 |
gtagcatcatttggtcaacaagcatttcaagtccaaattcaataaattccacagctcaacttgttgatgtaggaaacttgattctaagtgacatcaattc |
4163751 |
T |
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| Q |
213 |
tggatcaacaatttgggatagttt |
236 |
Q |
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| |||||||||||||||||||||| |
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| T |
4163750 |
tagatcaacaatttgggatagttt |
4163727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 16 - 236
Target Start/End: Complemental strand, 4134783 - 4134569
Alignment:
| Q |
16 |
atatggattgcaaacagagatcaaccactcaaggattcaaatggaatagtcacaattcacaaaaatggaaatcttgtaatattgaacaaagaaaatggta |
115 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| |||||||| |
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| T |
4134783 |
atatggattgcaaacagagatcaaccactcaaagattcaaatggaattgtcacaattcacaaagatggaaatcttgtaatattgaacaaaccaaatggta |
4134684 |
T |
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| Q |
116 |
gcatcatttggtcaacaagcatttcaagtccaaattcaataaattccacagctcaacttgttgatgtaggaaacttgattctaagtgacatcaattctgg |
215 |
Q |
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| T |
4134683 |
tcatcatttggtcaacaaacatttca--tc----ttcaacaaattcaacagctaaacttgatgatgcagggaacttgattctaagagacatcaattctgg |
4134590 |
T |
|
| Q |
216 |
atcaacaatttgggatagttt |
236 |
Q |
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| T |
4134589 |
agcaacaatctgggatagttt |
4134569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 16 - 236
Target Start/End: Complemental strand, 4145585 - 4145371
Alignment:
| Q |
16 |
atatggattgcaaacagagatcaaccactcaaggattcaaatggaatagtcacaattcacaaaaatggaaatcttgtaatattgaacaaagaaaatggta |
115 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |||||| | |
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| T |
4145585 |
atatggattgcaaacagagatcaaccactcaaagattcaaatggaattgtcacaattcacaaaaatggaaatcttgtaattttgaacaaaccaaatggca |
4145486 |
T |
|
| Q |
116 |
gcatcatttggtcaacaagcatttcaagtccaaattcaataaattccacagctcaacttgttgatgtaggaaacttgattctaagtgacatcaattctgg |
215 |
Q |
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| T |
4145485 |
gcatcatttggtcaacaaacatttca--tc----ttcaacaaattcaacagctaaacttgatgatgcagggaacttgattctaagagacatcaattctgg |
4145392 |
T |
|
| Q |
216 |
atcaacaatttgggatagttt |
236 |
Q |
| |
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| ||||||| ||||||||||| |
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| T |
4145391 |
agcaacaatctgggatagttt |
4145371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 13 - 236
Target Start/End: Complemental strand, 4124241 - 4124024
Alignment:
| Q |
13 |
aatatatggattgcaaacagagatcaaccactcaaggattcaaatggaatagtcacaattcacaaaaatggaaatcttgtaatattgaacaaagaaaatg |
112 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
4124241 |
aatatatggattgcaaacagagatcaaccactcaaagattcaaatggaatagtcacaattcacaaaaatggaaatcttgtaatattgaacaaaccaaatg |
4124142 |
T |
|
| Q |
113 |
gtagcatcatttggtcaacaagcatttcaagtccaaattcaataaattccacagctcaacttgttgatgtaggaaacttgattctaagtgacatcaattc |
212 |
Q |
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|| || || |||||||||| ||||||| || ||||| |||||| ||||||||||||| |||| ||||||||||||| | || || |||| ||| |
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| T |
4124141 |
gtgttattatatggtcaacaaacatttca--tc----ttcaacaaattcaacagctcaacttgctgattcaggaaacttgattttgagagatatcagttc |
4124048 |
T |
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| Q |
213 |
tggatcaacaatttgggatagttt |
236 |
Q |
| |
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|||| ||||||| ||||||||||| |
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| T |
4124047 |
tggagcaacaatctgggatagttt |
4124024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 13 - 236
Target Start/End: Complemental strand, 4153591 - 4153374
Alignment:
| Q |
13 |
aatatatggattgcaaacagagatcaaccactcaaggattcaaatggaatagtcacaattcacaaaaatggaaatcttgtaatattgaacaaagaaaatg |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |||||||| || |||||||||||||| ||||| |
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| T |
4153591 |
aatatatggattgcaaacagagatcaaccactcaaagattcaaatggaattgtcacaattcacaaagatggaaattttataatattgaacaaaccaaatg |
4153492 |
T |
|
| Q |
113 |
gtagcatcatttggtcaacaagcatttcaagtccaaattcaataaattccacagctcaacttgttgatgtaggaaacttgattctaagtgacatcaattc |
212 |
Q |
| |
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|| || || |||||||||| ||||||| || ||||| |||||| ||||||||||||| |||| ||||||||||||| | || || |||| ||| |
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| T |
4153491 |
gtgttattatatggtcaacaaacatttca--tc----ttcaacaaattcaacagctcaacttgctgattcaggaaacttgattttgagagatatcagttc |
4153398 |
T |
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| Q |
213 |
tggatcaacaatttgggatagttt |
236 |
Q |
| |
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||| ||||||| ||||||||||| |
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| T |
4153397 |
cggagcaacaatctgggatagttt |
4153374 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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