View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1936_low_31 (Length: 248)
Name: NF1936_low_31
Description: NF1936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1936_low_31 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 181; Significance: 7e-98; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 12 - 248
Target Start/End: Original strand, 38089848 - 38090087
Alignment:
| Q |
12 |
attatactgaccatggcaggccaactgtaagttaattccatg----tcttaaatgaaaactaaaatgctaacatatagttatggcaaataatttacacaa |
107 |
Q |
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| T |
38089848 |
attataatgaccatggcaggccaactgtaagttaattccatgcatgtcttaaatgaaaactaaaatgctaacatatagttatggcaaatg---tacacaa |
38089944 |
T |
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| Q |
108 |
acac--actcctgagttttggaattaaagtgtataaatttaatataacatgtttatgtgcaggctcttcaatttcttggttgtgataatctaaaacttgg |
205 |
Q |
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| T |
38089945 |
acacacactcctgagttttggaattaaagtgtataaatttaatataacatgtttatctgcaggctcttcaatttcttggatgtgataatctaaaacttgg |
38090044 |
T |
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| Q |
206 |
tccattgagacacattgacagcccgaaaaatcatataagcata |
248 |
Q |
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| T |
38090045 |
tccattgagacacattgacagcccaaaaaatcatataagcata |
38090087 |
T |
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Target: chr4 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 148 - 244
Target Start/End: Original strand, 32730103 - 32730199
Alignment:
| Q |
148 |
tataacatgtttatgtgcaggctcttcaatttcttggttgtgataatctaaaacttggtccattgagacacattgacagcccgaaaaatcatataag |
244 |
Q |
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| T |
32730103 |
tataacatatatatatgcaggctcttaaaattcttgaatgtgataatctaaaacttggcccattgaaacacatcaacagccccagaaatcatataag |
32730199 |
T |
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