View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1936_low_36 (Length: 225)
Name: NF1936_low_36
Description: NF1936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1936_low_36 |
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Alignment Details
Target: chr8 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 16 - 206
Target Start/End: Complemental strand, 42924846 - 42924660
Alignment:
| Q |
16 |
atgaaatagggtatggtggtaaatgtgcaagtcacgaggcagaatccagatgtttacaaatatgagaaacagcgtggttctggcaattgcaattgcatca |
115 |
Q |
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| T |
42924846 |
atgaaatagggtatggtggtaaatgtgcaagtcacgaggcagaatccagatgtttacaaatatgagaaacagcgtggttctggcaatcgcaattgcatca |
42924747 |
T |
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| Q |
116 |
gtagtgttagagtgctgctataaatcatgtttgattattcatacttccgggggaaataattgtttaaatttacctttagtaataagatatg |
206 |
Q |
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| T |
42924746 |
gtagtgtt----tgctgctataaatcatgtttgattattcatacttccgggggaaataattgtttaaatttacctttagtaataagatatg |
42924660 |
T |
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