View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1936_low_38 (Length: 218)
Name: NF1936_low_38
Description: NF1936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1936_low_38 |
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Alignment Details
Target: chr4 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 7 - 185
Target Start/End: Original strand, 55649639 - 55649814
Alignment:
| Q |
7 |
tatgcttattggaaaaaaccaagaactgtcgtgaaaaagaagaacttgctgacgaaggattaacatcaaattgttcgttaattacaaataacttatttgg |
106 |
Q |
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| T |
55649639 |
tatgcttattggaaaaaaccaagaactgtcgtgaaaaagaagaacttgctgacgaaggattaacatcaaattgttcgttaattacaaataacttatttgg |
55649738 |
T |
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| Q |
107 |
taaatcacagaagaagaagagagttaactttaaacttcctcacactgttatattttacaaaccagaagagccttattgc |
185 |
Q |
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| T |
55649739 |
taaatcac---agaagaagagagttaactttaaacttcctcacactgttatattttacaaaccagaagagccttattgc |
55649814 |
T |
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